RNA id: TU349400


Basic Information

Item Value
RNA id TU349400
length 2462
lncRNA type antisense_over
GC content 0.44
exon number 3
gene id G307499
representative True

Chromosome Information

Item Value
chromosome id CI01000093
NCBI id null
chromosome length 1475560
location 146434 ~ 156389 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGCAAGTGTCTGCTGCTGGGACAAGTCCAGCATGCCAAAACGGATTTCACCACAGCATTTAGCCAGAAATACAAATATTTCAATTAAAAAATTAAGATGCATCAACTGTATTACTAAAAACATTGGAATATGTAATGATTTCTCTTTCTTTCTGTCTGTGCGTCTCCCTCATTTGAAAGAAACCCGTGGTGTTCTGACAGTCCAAGAAAGTGAATTTTACAGAGCCCAGGCACGTATCATTAGAGCGTTAAAAGAAGCGCGGCTGGTGCCGTGGGTCTCCTCCTGTGCTGCCTTCCCTCTAAACGTGTGACTCTGGCTGGCTGAGAGCATGAGAACGGAGCCTTTTGAATAGCAGGATCCTCATACTTGGCTAGTAACCATGGAAGCAGATGCCTACTCTCTTTGCCCTCCTTACCTCCTTGCTCCCTCATTGAAAAGAGGGCACGCCTCGCTTTCTTCTTCCTGACCGAACTTGCCTGGCCCTCAGAGGAAGCGATTGAGCAGGTCACTGGTCTAGACTTGTTTGCATGGTCCACGGAACAGCCTTGAGGTAACCCTTGCTCCCCGTGCGTCGCACCACCGTACACTGCAGGGGGGGACATCGGAGATGTGAATTTGAAAAGGAGCTCCGTCCGATTTTGCCTTTGTGCCTTTTTTTCCCTCATCGATCGGCTGAATATCGAACCCTCAGTCTGTGCATGTGTGAAACGGATAGCTTAGTAAGCATTTTTTCTAATCAAGCTTGCGTTGTGGGCCAACTCTCTCGTTTTTCTCTCTCGTACTTAGCCGCCTCGAACCCTCCCTCTCTCTCTGTCCCTCTTTCTCCATTTTTCTCTCTCTCTCTCTTTTCCTCTCTTGCTCTTTCTGCTTTTTCTTCCTGTTCTACGCTCCTCTAAGCATTGTTTTGATTATCTGGGACATTTGGATAAGCATGTTGTGATACTTCTAATCAGTGTCAGTTTTTTTAATCTGTTATTGAGTGATTTCAGCTTTGTGTTACCCGTGGATTTTGCATGTACAACTGTTTGCTTTTTCAATTTCAACTGGGATGACCACTAACCACAGAGGGACTTTTTAGACTATTTAAACAAAAACACTGGCAAATCCACTGCTTTTGTTTCCATTCCATCTTAAAAGATGTATGGATGACAGTTTCTCCTTTTAAAAAACATAACAATTTTCATGTGAAAAACTGATGTCTCATGAGACCAACAACAAAAAAGTGGAGAGAGTTTGAGCAGAGGACGACTGACCCGAAGGCACGGTGACTTGGAGAAAAGGCTGGTATCACACTGGGAGAAAAAAAAAGCGAAAGGGAGAGAGATGGGGTTCATTCTGTCTTTTCTCCCGCTCTCTCTCTCTCCCTTTCTCCTGCTGCCTTTGTGTGCCGTGCAGGAATGTGCTTGCTTTTCATTTCTTTCTTTGTGTCTGCCCCTCAGGCCCTAGCAGGCAGTGTCTTATGCCACAGCGGGGTCATGGCAAACACAGAGACACATTCATGGCCGCATCAAGTTTATGTGAGAATCTGGTCTTTCCTTGCCCCTCATTTCCATATGAATTGTTAATAAAATAGCAGTCATGTGAAGGGGAGATCACTCCAGCAGGGGAAGTCAAGCAAAGCAACCTTGGTTTTAAAACGGCCTCATCCCTTCTGTTCCTTCGATGCAGAAACGCTCCGGTTAAAGCTATCACGAGCATATGTCATCATTATTGTCCATGTTTACTTTAGCACAACCACATGTGAAATGCTCCTTCACAAAACAACAGCGGAAACTCTGTATTTGGATTAATGGCTCAATGAAAATAACATGTCTAAATAATCAATTTTGAGAAATAACCATATAAAATTCCATGTTTTGTTGGGTGTAACAATTACAGCGATATCCTACTGGAGTTTCTCACATATGCATTAAAGGCAAGACTCTTCGTTTTAAAATTTTAGCCAGCAATAAAACAAAATGGAGCTTGGGAAAAACAGATCCCCATTTTTAGTTTGCTGTTCTCAAGCCAATCACAGTTTGGGCCTTCTGGACAGGGAGCAGGATACATCTTGAAGGGCTGGCCAGTTGATTGACTTTTCTTTGGGTTCAACACACGTGTCCTGTGACCCCGCCACACTTTCCCATGCCCTCCGATGCCCCATCTATTCTAACAGACATCCCAAATTCCCCCCATCCTCCACAGACAGATCAGCTTCAGCCATCACTTGACAGCAGCCATGTGTACGACTTCCCTCTGTGATGTCATAGAGGTTTGCTGTCCAATAATTAGAGGGCGAGGAAGGGTCAGGATAGAAAGAAGGGTGGTGATTGGACAAGATAAAGGAGCTCACCAAATCAACCTGCTCCGACTGCTTTTTATTCCGCACACGTGACGTTTCATTAAATGTGCAGTAAAGAGAAGTAACTGAAATAATATCATCGAGCAAAACATTTACACATGAATGTTAACCTGGAGGGGGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU349389 lncRNA downstream 9147 140102 ~ 140431 (-) True G307494
TU349385 lncRNA downstream 13910 135430 ~ 135668 (-) True G307490
TU349383 lncRNA downstream 17303 131931 ~ 132275 (-) True G307488
TU349382 lncRNA downstream 17763 131588 ~ 131815 (-) True G307487
TU349381 lncRNA downstream 18007 131304 ~ 131571 (-) True G307486
TU349426 lncRNA upstream 28927 185274 ~ 185571 (-) True G307518
TU349427 lncRNA upstream 29367 185714 ~ 185948 (-) True G307519
TU349429 lncRNA upstream 32958 189305 ~ 189544 (-) True G307521
TU349430 lncRNA upstream 34751 191098 ~ 191926 (-) True G307522
TU349550 lncRNA upstream 158926 315273 ~ 339260 (-) True G307622
CI01000093_00044285_00045637.mRNA mRNA downstream 103926 44016 ~ 45652 (-) False CI01000093_00044285_00045637
CI01000093_00021721_00029528.mRNA mRNA downstream 120050 21721 ~ 29528 (-) True CI01000093_00021721_00029528
CI01000093_00000644_00001222.mRNA mRNA downstream 148356 469 ~ 1222 (-) True CI01000093_00000644_00001222
CI01000093_00224221_00233968.mRNA mRNA upstream 67518 223865 ~ 236442 (-) True CI01000093_00224221_00233968
CI01000093_00372074_00372877.mRNA mRNA upstream 215448 371795 ~ 373025 (-) True CI01000093_00372074_00372877
CI01000093_00441786_00443029.mRNA mRNA upstream 285021 441368 ~ 443590 (-) True CI01000093_00441786_00443029
CI01000093_00601248_00607534.mRNA mRNA upstream 444738 601085 ~ 607729 (-) True CI01000093_00601248_00607534
CI01000093_00633602_00642455.mRNA mRNA upstream 475279 631626 ~ 642522 (-) True CI01000093_00633602_00642455
TU349703 other upstream 911672 1073022 ~ 1073753 (-) True G307751

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00018321 False 5254 lncRNA 0.33 2 NC_007126.7 29770611 ~ 29776205 (-)
tiger barb (Puntius tetrazona) TU158275 True 2172 lncRNA 0.35 2 NC_056713.1 16147492 ~ 16167005 (+)