RNA id: TU349427


Basic Information

Item Value
RNA id TU349427
length 235
lncRNA type inter_gene
GC content 0.29
exon number 1
gene id G307519
representative True

Chromosome Information

Item Value
chromosome id CI01000093
NCBI id null
chromosome length 1475560
location 185714 ~ 185948 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTCACTCATTTGCTATAATAATATAGTGGATAGCAGTGTTGAGGAAAGTTACTTTTAAAAGTAATGCATTATAATATTGCGTTACTCCCTTAAAAAAGTAACTAATTGCATTACTTAGTTACTTTTTATGAAAAGTAATGCGTTATGTTACTTTTGCATTACTTTTTCTCACCTGGGCTGGGCTTGTTTGTTTGTTTTTTTATAACAGCAAAAGAAGTACTATTTTTGGCAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU349426 lncRNA downstream 143 185274 ~ 185571 (-) True G307518
TU349404 lncRNA downstream 29325 146434 ~ 156389 (-) False G307499
TU349400 lncRNA downstream 29367 149578 ~ 156347 (-) True G307499
TU349389 lncRNA downstream 45283 140102 ~ 140431 (-) True G307494
TU349385 lncRNA downstream 50046 135430 ~ 135668 (-) True G307490
TU349429 lncRNA upstream 3357 189305 ~ 189544 (-) True G307521
TU349430 lncRNA upstream 5150 191098 ~ 191926 (-) True G307522
TU349550 lncRNA upstream 129325 315273 ~ 339260 (-) True G307622
TU349577 lncRNA upstream 161750 347698 ~ 347953 (-) True G307648
TU349588 lncRNA upstream 177681 363629 ~ 364071 (-) True G307659
CI01000093_00044285_00045637.mRNA mRNA downstream 140062 44016 ~ 45652 (-) False CI01000093_00044285_00045637
CI01000093_00021721_00029528.mRNA mRNA downstream 156186 21721 ~ 29528 (-) True CI01000093_00021721_00029528
CI01000093_00000644_00001222.mRNA mRNA downstream 184492 469 ~ 1222 (-) True CI01000093_00000644_00001222
CI01000093_00224221_00233968.mRNA mRNA upstream 37917 223865 ~ 236442 (-) True CI01000093_00224221_00233968
CI01000093_00372074_00372877.mRNA mRNA upstream 185847 371795 ~ 373025 (-) True CI01000093_00372074_00372877
CI01000093_00441786_00443029.mRNA mRNA upstream 255420 441368 ~ 443590 (-) True CI01000093_00441786_00443029
CI01000093_00601248_00607534.mRNA mRNA upstream 415137 601085 ~ 607729 (-) True CI01000093_00601248_00607534
CI01000093_00633602_00642455.mRNA mRNA upstream 445678 631626 ~ 642522 (-) True CI01000093_00633602_00642455
TU349703 other upstream 882071 1073022 ~ 1073753 (-) True G307751

Expression Profile