RNA id: TU349591


Basic Information

Item Value
RNA id TU349591
length 434
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G307662
representative True

Chromosome Information

Item Value
chromosome id CI01000093
NCBI id null
chromosome length 1475560
location 398506 ~ 398939 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACATACTGCATCAATTACAACATCATGGCTGTGTAGAAGAAGGATCCGGGTACTGAAATGGCCAGCCTGCAGTCCAGATCTTTCACCCATAGAAAACATTTGGCGCATCATAAAGAGGAAGATGCGACAAAGAAGACCAAAGACAGTTGAGCAACTAGAAGCCTGTATTAGACAAGAATGGGACAACATTCCTATTCCTAAACTTGAGCAACTTGTCTCCTCAGTCCCCAGACGTTTGCAGACTGTTATAAAAAGAAGAGGGGATGCCACACAGTGGTAAACATGGCCTTGTCCCAACTTTTTTGAGATGTGTTGATGCCATGAAATTTAAAATCAACTTATTTTTCCCTTAAAATGATACATTTTCTCAGTTTAAACATTTGATATGTCATCTATGTTGTATTCTGAATAAAATATTGAAATTTGAAACTTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU349545 lncRNA downstream 17976 379933 ~ 380530 (-) True G307618
TU349544 lncRNA downstream 22216 375908 ~ 376290 (-) True G307617
TU349588 lncRNA downstream 34435 363629 ~ 364071 (-) True G307659
TU349577 lncRNA downstream 50553 347698 ~ 347953 (-) True G307648
TU349550 lncRNA downstream 59246 315273 ~ 339260 (-) True G307622
TU349605 lncRNA upstream 4861 403800 ~ 404246 (-) True G307673
TU349603 lncRNA upstream 9854 408793 ~ 409143 (-) True G307671
TU349487 lncRNA upstream 26821 425760 ~ 426433 (-) True G307568
TU349595 lncRNA upstream 96835 495774 ~ 499206 (-) False G307665
TU349594 lncRNA upstream 97375 496314 ~ 499206 (-) True G307665
CI01000093_00372074_00372877.mRNA mRNA downstream 25481 371795 ~ 373025 (-) True CI01000093_00372074_00372877
CI01000093_00224221_00233968.mRNA mRNA downstream 162064 223865 ~ 236442 (-) True CI01000093_00224221_00233968
CI01000093_00044285_00045637.mRNA mRNA downstream 352854 44016 ~ 45652 (-) False CI01000093_00044285_00045637
CI01000093_00021721_00029528.mRNA mRNA downstream 368978 21721 ~ 29528 (-) True CI01000093_00021721_00029528
CI01000093_00000644_00001222.mRNA mRNA downstream 397284 469 ~ 1222 (-) True CI01000093_00000644_00001222
CI01000093_00441786_00443029.mRNA mRNA upstream 42429 441368 ~ 443590 (-) True CI01000093_00441786_00443029
CI01000093_00601248_00607534.mRNA mRNA upstream 202146 601085 ~ 607729 (-) True CI01000093_00601248_00607534
CI01000093_00633602_00642455.mRNA mRNA upstream 232687 631626 ~ 642522 (-) True CI01000093_00633602_00642455
CI01000093_00643216_00644177.mRNA mRNA upstream 244036 642975 ~ 644177 (-) True CI01000093_00643216_00644177
CI01000093_00693070_00700737.mRNA mRNA upstream 293130 692069 ~ 703605 (-) False CI01000093_00693070_00700737
TU349703 other upstream 669080 1073022 ~ 1073753 (-) True G307751

Expression Profile