RNA id: TCONS_00019111


Basic Information

Item Value
RNA id TCONS_00019111
length 2523
lncRNA type antisense_over
GC content 0.42
exon number 2
gene id XLOC_008908
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 1140445 ~ 1143069 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aattttattttgcttgttttaagcaataACTCACTTCATTGTGGTATATTATTTCTTGAAACAACACAGTATTTTTTGCtagtcaagaaaatgcttcttgatttagaaaTCTTTacatgtttggactagaaacaacacacaaaagctttttttgcagtgtacattaAATACTACAGTATGTTTCGCTGTAATTCATATAGCGCACCCGTACTATGTGCTTTTGACCATGTGCTTAGATAACTTAATTGTGCAATTTAGGACTTTGTTTAGACTTTAaacttaaattacagaaaaactaaaaCACTAGCTTAGATAACCGACTGTAACATTACTGTCTTCATTGTCAAAACTTGAAATAACCTAATAAAAGGAATATAAAACATACTGATTTTTGTGATCAACATTTCCAAGGCAGGCTTATTAAACTGCACgcattttattcattatatttcatTACAGTGCACAAAATAAAAGCTCTTTTCACAGAAGAGGAGACACAGAATGGCAAAGATTACACTGGAGGGGAAATAAACACTGCTGTTGTCTCTGATAGTGAGGCAGGAAGATGACCCTGACAGTGTTGGTCTATCAGTGATGTCTAGTACTCTGAAAAACAACTGCAGTATGAAAATAAGCTTAATGTGtgcaacaaatgaacaaacacaaACCATGTCAGATGTTCTAATGTCTCCACAACAAACACCTTTACAAACCATCAGCTGGTTAACATAAACTCATGAAAACTAGTAGCGAATGCTTTCCAGTAACagttgttttcctgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttttcctgctTGTAAACTGTTGTTAACTGTAGTTGGTAAAAATTTGTGTATTGAAATATTTTGCATACattataatgtaaaaattaatttgcGCTCATAATCTTTATTATAGATCACCATAATCTTCCCTCCCCCTCGAAAAGACTTCTTCACTTGTGGTCACATGGAAcacctttagggtggagctatcagtaatttagggcggagctatcagtcaattcgggtggagctatcagtaattttgggcggagctatcagtcctttaaagtagagctatcagtactttagggtggaccaatcagtcctttagggcggggctatcagtactttagggtggggctatcagaccATTAGGccagggctatcagttatttgggTTGAAGCTATCAGTAacttagggcgggtctatcagttcAAAGCGGAGTTTTAAATACTAAGGGGAGAGTTATACattttttagggcggagctatcgcgGGGATTATTAGTCTATTAGGGCATATCTGTCAATAATttaggggcggagctatcagtactttagggtggacctatcagtcctttagggcggggctatcagacCATTAGGCCAGGGCTTTAGGGTAAGGCTGTCAGTAATTTAGGGAGGGTCTATCAGTCActtggggcggagctatcagggcAAGGTTATCAGTCTATTAAGGCAGGTCTATCAGTAATTTGGTTCGGAGTTATCAGTACTTTAGGTCAAAGCTATTAGTAATTTAGGGAGGGtctttcagtcctttagggcggagctatcagggcGGGATTATCAAAccattagggcagggctatcagtaatttgggtcggagctatcagtactttaagGCAAGGTTATCAGTAATTTATGGAGGgtctatcagtcttttagggtggtgTTTTAAATACTTAAGGGCGGACCTATCAGGCCGGCATTATCTGAccattagggcagggctatcagtaatttagagcgaagctatcagtcctttatggTGGGCCTATAAGTCagttagggcgggactatcagttagttagggcgggactatcagtcatttagggtggggctattagtacTTTAGGGTGGACCTATCCATtgtttagggtgtggctatcagtcctcTAGGGCGGGGCTttaagtcatttagggcagagctatcagtcctttagggtggactTTAAACATATTTACTTGACAAAAATAAAGACTTCATATTTCCACAAAGAACTGGTTCTCATAGTGAAGTGCAGAGGATTAAGTCCGGGCCTCCAGTAGGCAGATCAGGATGTCATGACCATGTAGATCTGCATCTGTGCTTCAGTGTCCTCTGTTTGGCATCTCTATTTTGGTGGAGGTCTCGGTCAGAGAGCCGTGAGGGAGCGGAGCGCGGCTCAGTGTGGCAGTCAGCTTCTTGCGGAAACCGCGACACAGGAAAACATAAATGAGCGGGTCCAGACACACATTAGAGGATGATATCCAGAGCGTGATCTCTTTGGCGAAATACAGCTGGTTTTGGGCCCAGCACTGGGCTGAAGTGCTCCGCGTCTGGCTGAGGGTGTACGGGACTCGGGCCAGGTGGAAGGGGGcgaagcaaacaaagaaaacccCCACCACCACAAACACCTGAGGAGCAGAGGAGAGTTAGCATGCGTTAGCATCTCTTGCATGGTTGACATATTGGAAAGTTTATTTTACAGTGCTGCTTAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019110 lncRNA downstream 132086 1007600 ~ 1008359 (-) True XLOC_008903
TCONS_00019109 lncRNA downstream 146858 986144 ~ 993587 (-) True XLOC_008902
TCONS_00019108 lncRNA downstream 146905 986144 ~ 993540 (-) False XLOC_008902
TCONS_00019107 lncRNA downstream 147056 986144 ~ 993389 (-) False XLOC_008902
TCONS_00019105 lncRNA downstream 232138 877204 ~ 908307 (-) True XLOC_008898
TCONS_00017602 lncRNA upstream 380403 1523472 ~ 1534219 (-) True XLOC_008912
TCONS_00017604 lncRNA upstream 446744 1589813 ~ 1590795 (-) False XLOC_008914
TCONS_00017607 lncRNA upstream 463780 1606849 ~ 1611693 (-) False XLOC_008915
TCONS_00017613 lncRNA upstream 578518 1721587 ~ 1725484 (-) False XLOC_008918
TCONS_00017624 lncRNA upstream 687201 1830270 ~ 1834822 (-) False XLOC_008922
TCONS_00017594 mRNA downstream 74176 1045374 ~ 1066269 (-) True XLOC_008907
TCONS_00017593 mRNA downstream 102252 1033244 ~ 1038193 (-) True XLOC_008906
TCONS_00017592 mRNA downstream 103567 1033243 ~ 1036878 (-) False XLOC_008906
TCONS_00017591 mRNA downstream 108934 1025308 ~ 1031511 (-) True XLOC_008905
TCONS_00017590 mRNA downstream 118009 1017437 ~ 1022436 (-) True XLOC_008904
TCONS_00017595 mRNA upstream 36807 1179876 ~ 1197408 (-) False XLOC_008909
TCONS_00017596 mRNA upstream 38354 1181423 ~ 1198886 (-) True XLOC_008909
TCONS_00017598 mRNA upstream 309765 1452834 ~ 1484795 (-) False XLOC_008911
TCONS_00017599 mRNA upstream 310467 1453536 ~ 1485086 (-) True XLOC_008911
TCONS_00017600 mRNA upstream 351424 1494493 ~ 1534258 (-) False XLOC_008912
TCONS_00017537 other downstream 714689 425695 ~ 425756 (-) True XLOC_008873
TCONS_00017535 other downstream 790878 349451 ~ 349567 (-) True XLOC_008870
TCONS_00017597 other upstream 178721 1321790 ~ 1321906 (-) True XLOC_008910
TCONS_00017627 other upstream 691902 1834971 ~ 1837883 (-) True XLOC_008922
TCONS_00017639 other upstream 1122900 2265969 ~ 2266083 (-) True XLOC_008927
TCONS_00017647 other upstream 1481959 2625028 ~ 2625663 (-) True XLOC_008933
TCONS_00017655 other upstream 1593314 2736383 ~ 2736498 (-) True XLOC_008940

Expression Profile

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