RNA id: TCONS_00017598


Basic Information

Item Value
RNA id TCONS_00017598
length 2542
RNA type mRNA
GC content 0.49
exon number 15
gene id XLOC_008911
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 1452834 ~ 1485086 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGGGCCTCATACACTGTGGTAAACCATCATGGTTTTACACAACCTACATAACGTCTACTTAATTTGATGTTAtttcatttgtgtattgttgagCACTCCTTTTCCTCAGTTGTATTGTTTCTGTGTGTAGCCTAATGGCGCGTATACAGGCTTGCAGTAAACAAGCAAGTTCCCGCCACTTCCTGCTGCTGCCAGTCGCGGAAACACCAGCGTGCgcgtgtgtaatgtgtgtgtgctgcatgaaTGGGTTCAGGATTGACCGGGTTTATTGTCTCTTATCTGTAAATATCTCCTCACGGAATATCTGAGGCGCTGTCTTCGCGCGCAAATAATGGTCGCGCACATGGCAGATTATGCAGAAACAAAACATCTGACCGACGGGAATGGAGACGTTTCACCATCAGACCTGAAGGATCATCCTGCTGAAAGCTCCCACAGCAGTTCAGacagCACATCAGCAGAGGAGAGCTCGGAGGAAGACGAGACtcaggaggaggaagaggacaGAGAGTCAGACTCCAACACGAAAGCCGGTGCTGAAAATCACAGTGATGAGCCGCTCGCGTCCTGCTGTGAGAAGTGTAGAGCTCTTAAGAACCCTAAATATGAGCTGGTCACCCCCAGGAAAATGTCCAAAGAGCGGCTGCAgctCCAGCTGGACGCTGAGGGTGTGTACGAGTGTTCGGACACTGGGCTGGTGTTCGAGGTCTCCCAGCGGGTCAAGATCACCTACTGCGTCCTGTCCTGGAGCAGATTCAGCACATACCTGACCGGGTCATGGAAATTTGCCGGACCCATTTTTGATGTGGACTGCGATCCGGCTATCCTGAAATCCATCCAGTTCCCGCATTCACTGTGTCTCGCAGCAGATAAAGACAACGAGGTGAACTTCAGCGTTCTGCATGTGAAGAACAGTCGGGGTCTGATCGAGCCGTCCAGCGATCACTCCGGGAGTCACGTGAAGTGGACGGTGTCGTCTCTGTCCCCCGTGGGTCCCGTCGTCCAGACCTCCAGATCCGCAGAGCATCATGGGGTGGTGCAGGTCTTCAGAGAGCTGGGTCTGGAGAGCTCGTCCTTCTCCTTCAGGGTTTACCTGGCCAGAAACATCTGCTCTGACATCAAGGACATCAGGAAGGCCGTTCGGAGGGCGAACAACTGTAAGAACAACAAAAAGTACATTCTAGTTGACAAACCACCAACATGCATGCTGGAGGAGAACAGAAAGTACCGTCTGATCAGCGAACCCGTGGGTCACATCACACCAGAGgacatGCTCTTCACTCCGGACAGTGTGGAGGTGAAGGGATACATTGAGGTCTTCTTTGAGGACAGTCCTCCATTCAAACTCTCCCTGACGGATGCAGACTCGGGTCAGACTGTATGGACGTCCACTATCAGAGAGGgAGACTGCACACACCATGTAGAAGAAATGCCCAAAAGACCAACGAAAGGCACAAAGAGACACAGCAGCACCTCAGACGATGAGCTGAGCTACAAGCGCAGCAAGAAAACTCATGCTGTGGATGAGCCTGACTGTAACGCGGTGGCTGTGGCTCCAGCTCTGACCGATCAGCAGCTGATGCGAGTGGCCAAACACATGGGGAAGGAGTGGAAGATCGTGGCCATCAGCTATCTGGGCTTCAGCAACCAGAACCTGGAGGAGATGGAGGCGGCTGAGGAGAACGCCACCATGCTGAAGTTCACCATGCTGGAGCGCTGGAGACGCCGGCAGCCCAAGGGGAAAGCTGGAGTTCAGGAGCTGCACAATAGTCTTAAAGACAACGACGACGTTCCCAATGAGGTCATCGCTGTGCTAGACGagatgCTACACAATAAATGACCGCATGAAGCTGTGAGACGAGCATGTGGACGTCTGCTGATCTCCACCATGTGACGGAAATGTCTTTTAACCACTATTAGAGAGCCATGAAGAGGTCCTGCAGTAAAAGGCCAGTCAGCTTTAACACAGGAGTCTGCCGCGCTCGCCGGTTTACAAACCTCTCAACCAATCTGAGCTCTGTTTACTGTTGAGTGGGAGATTTTGTTGGTATGTTGATCTTTGtgtttagcttttatttttttatatcttgtACATATTGTAAGTATTTGTCGAATAATGAGCCAGTTTTTATGAAACTGTTTTGATATTTCGGTGCTTTTTCCTGACGGTTGTGGTAAAACTGCGTATAAATATCATGATATTCATGTAAAACAAAGACTCTAATCCACACGTGAGCATCAACAGTACCTTGTAGATGAACTTCCAGTGGTCGAACACACCACACTGTGTAGGAATATTGTCTGGAAGGGTGTTTTCTCTAATGTGCTGTCTCAGGGGATGTTTGGAGGAGTCTGACTCACCTTTCCTTAAGTGTATAAATCAGGGAAATGAACAAAATCTGCAGCGCTCCTGTTATTGAAGCATTTCAGACATTTTTGTGTGTCAGAAAGACTTGTTCTGCAATATGAGGCTGTTTGAACTGCTTTCTGTTCAAAGTTCAGTCAATAATGCCTCAAAGCAAGATTAaacaccacaaaatca

Function

GO:

id name namespace
GO:0006406 mRNA export from nucleus biological_process
GO:0032784 regulation of DNA-templated transcription, elongation biological_process
GO:0007165 signal transduction biological_process
GO:0000347 THO complex cellular_component
GO:0000445 THO complex part of transcription export complex cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-131121-429 Predicted to be involved in mRNA export from nucleus and regulation of DNA-templated transcription, elongation. Predicted to act upstream of or within signal transduction. Predicted to be located in cytoplasm. Predicted to be part of THO complex part of transcription export complex.

Ensembl:

ensembl_id ENSDART00000129356

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019111 lncRNA downstream 309765 1140445 ~ 1143069 (-) True XLOC_008908
TCONS_00019110 lncRNA downstream 444475 1007600 ~ 1008359 (-) True XLOC_008903
TCONS_00019109 lncRNA downstream 459247 986144 ~ 993587 (-) True XLOC_008902
TCONS_00019108 lncRNA downstream 459294 986144 ~ 993540 (-) False XLOC_008902
TCONS_00019107 lncRNA downstream 459445 986144 ~ 993389 (-) False XLOC_008902
TCONS_00017602 lncRNA upstream 38677 1523472 ~ 1534219 (-) True XLOC_008912
TCONS_00017604 lncRNA upstream 105018 1589813 ~ 1590795 (-) False XLOC_008914
TCONS_00017607 lncRNA upstream 122054 1606849 ~ 1611693 (-) False XLOC_008915
TCONS_00017613 lncRNA upstream 236792 1721587 ~ 1725484 (-) False XLOC_008918
TCONS_00017624 lncRNA upstream 345475 1830270 ~ 1834822 (-) False XLOC_008922
TCONS_00017596 mRNA downstream 253948 1181423 ~ 1198886 (-) True XLOC_008909
TCONS_00017595 mRNA downstream 255426 1179876 ~ 1197408 (-) False XLOC_008909
TCONS_00017594 mRNA downstream 386565 1045374 ~ 1066269 (-) True XLOC_008907
TCONS_00017593 mRNA downstream 414641 1033244 ~ 1038193 (-) True XLOC_008906
TCONS_00017592 mRNA downstream 415956 1033243 ~ 1036878 (-) False XLOC_008906
TCONS_00017600 mRNA upstream 9698 1494493 ~ 1534258 (-) False XLOC_008912
TCONS_00017601 mRNA upstream 9702 1494497 ~ 1534232 (-) False XLOC_008912
TCONS_00017603 mRNA upstream 89561 1574356 ~ 1584137 (-) True XLOC_008913
TCONS_00017605 mRNA upstream 105018 1589813 ~ 1590858 (-) True XLOC_008914
TCONS_00017606 mRNA upstream 111713 1596508 ~ 1622485 (-) False XLOC_008915
TCONS_00017597 other downstream 130928 1321790 ~ 1321906 (-) True XLOC_008910
TCONS_00017537 other downstream 1027078 425695 ~ 425756 (-) True XLOC_008873
TCONS_00017535 other downstream 1103267 349451 ~ 349567 (-) True XLOC_008870
TCONS_00017627 other upstream 350176 1834971 ~ 1837883 (-) True XLOC_008922
TCONS_00017639 other upstream 781174 2265969 ~ 2266083 (-) True XLOC_008927
TCONS_00017647 other upstream 1140233 2625028 ~ 2625663 (-) True XLOC_008933
TCONS_00017655 other upstream 1251588 2736383 ~ 2736498 (-) True XLOC_008940
TCONS_00017689 other upstream 2619613 4104408 ~ 4104526 (-) True XLOC_008968

Expression Profile

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