RNA id: TCONS_00017620


Basic Information

Item Value
RNA id TCONS_00017620
length 2228
RNA type mRNA
GC content 0.48
exon number 8
gene id XLOC_008921
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 1778773 ~ 1822548 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGAGATATTCCGGTTGATAGTGTTCAGCATCTCTGAAAGgtagttttaaaaaaagtgtgcCCATTGCTTTGTCACACAACAAAACAACTCCACTAACAGTACCAACAGTTTCACTTAATGCTaacttgtttaaattaaatgtgtacTGAAATTAGCTGAAAATACTAATTTTCTTGGACATAATCATTGATGTGAACAGCGTTTGCTTTATAGAGCTCTTTGACATTGGTTTTTCTTTGGCTTCTGTAACTGTGTATTATGGCAAGCGTAATAAATGTATATGCTCacctgagtaggataaactttttatctgatAAAGGTTTCAAGATTAGTAATTAGAATTAAATTAATAGGCCAGTTGTAGCACTTCTATTATATCGCTTTTGACTTAATAACAGACAATTTCGAGTTTACATCGAACATTTCTGAGGGgaaaaatgtcagaattgtgagtttgcATGACGCAATAAcggtttgtttttaaaattcagtGGCGGGAACGGGCTTCCACGGTGAAGCTATAAATCATGAGTGTAAAGTAGATGAGCCTCAGTTGACGCCCGTGCGTTTTGGAGGCGGAACGAGCCAAAGAATTTATAGTGAACCGCTCTCTCTTACCTCACTGATGTCAGAGCAGTCCAGCTGTGCGTTACTCgctgtatatatttattcttatatttaaatgaatgtaacTTGATTTACCACATTTCAGCGTTCATAAATGATGTTTCTGCTGCTGCTGTGTGTTCAGACCTCTTGCAGCTCTCCAATCTCCTCACCTGCTCAGGGCTTTCTGGAGCAGTATGGATACCTGTATAAAGACAACGAAACTTACCGCACAGCTGAAGTCAAGACTGCTATCAGAGAGTTTCAGTGGTTGTCTTGGCTGCCTGTCACTGGCCATCTGGACGCTGCGACTTTGGAAAAGATGGCATCGCCCCGCTGTGGGGTTACAGACGCGGGTAGCATTGATGCCTGGCAGGACAGAATAAACGGCATCTTTACGGGCAGACATGGGCAACATCTCCGTAAGAAGCGTTACACTCAGTTAGGGGAGAAATGGCAGAAGAAACAGCTGAGCTACCGCATCCTGAACTGGCCCCGGAGCCTTTCTACCAGTCAGGTGCATCTGGCAGTGAGTGCAGCGTTCCAGCTGTGGAGTAATGCCTCCGGACTGCAGTTCCTGGAGCTCCATCAGGGGCCAGCAGACATACGACTCGCCTTCTATGATGGAGAACACAACGATGGGGCAGGGAACGCTTTTGATGGACCAGGTGGTGCTCTGGCTCATGCGTTTTTCCCATTCCGCGGTGAAGCTCATTTTGACATGTCTGAGCGCTGGACGCTGAGCGGTTATAAAGGACACAACCTATTCCTGGTGACGGCGCACGAGATTGGCCACACTCTGGGTTTGGTGCACTCGCCGGTCCGTCACGCTCTCATGTCCCCGTACTATAAGAAGATCAGCTCCAATGCTGTGCTCAGCTGGGACGACATCACTGCCGTACAACAGCTCTATGGCAAACCACCCGGGGACACAGTGCAGCAGTTGGTGGGGCGGGCTTTAAGATGGACCATGCAGGACTGGCAGATTTCTCAAGACCCCAGAGAAAGTTCCCTCACACCCAATTACTGTCACGGTTTCTTTGATGCCATCACCACAGatgaGAATGGGGCCGTGCTGGTGTTCCAGGGCTATCGTTTCTGGTCGGTGTCTAACGGCAGTGTGAGCGATCCTTGTCTGCTGCAGACCCGCTGGCCACAGCTGTCTGTCACCATTGAAGCTGCTGCTTTCAATCCACTAGACAGAAAGCTATACTTCTTTAAAGGACGTCGGATGTGGCGTTACTCCGGATCTAATCTGGACCCTGGATTCCCCAAGAGGAGCAGTGCATTGGGTTTGCCTAAACACGTAGACTGTGCCTTCTTTTACCAGCCTCTGGGTCAACTGGTGCTCTTTAAAGGATCCCGCTACCTCGTCCTGAACCCCAGGTCTCTCAGCATGGAGCTGTACTACCCTCGTCCTCTGAGGGACTGGAAGGGGGTCCCGCGAGAGGTAAACGGGGCCCTGACAAGGCCTGACGGGATGCTTTATTTCTTTAAAGAGCAGCAGTATTGGAGGTTAGACATTGGGAAGCTGCGCATTACTGCGGCTGGACGGTGGGCAGACAGCCTGCAGTGGATCGGCTGCCAGAAAACTCCATCATTACTGGACAATGAGCTGTGA

Function

GO:

id name namespace
GO:0021782 glial cell development biological_process
GO:0030198 extracellular matrix organization biological_process
GO:0006508 proteolysis biological_process
GO:0030574 collagen catabolic process biological_process
GO:0060041 retina development in camera-type eye biological_process
GO:0031012 extracellular matrix cellular_component
GO:0005615 extracellular space cellular_component
GO:0046872 metal ion binding molecular_function
GO:0004222 metalloendopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008237 metallopeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
ko01002 Peptidases and inhibitors

ZFIN:

id description
ZDB-GENE-100226-1 Predicted to enable metalloendopeptidase activity. Acts upstream of or within glial cell development and retina development in camera-type eye. Predicted to be located in extracellular matrix. Predicted to be active in extracellular space. Orthologous to human MMP28 (matrix metallopeptidase 28).

Ensembl:

ensembl_id ENSDART00000180230

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00017613 lncRNA downstream 79339 1721587 ~ 1725484 (-) False XLOC_008918
TCONS_00017607 lncRNA downstream 193130 1606849 ~ 1611693 (-) False XLOC_008915
TCONS_00017604 lncRNA downstream 214028 1589813 ~ 1590795 (-) False XLOC_008914
TCONS_00017602 lncRNA downstream 270604 1523472 ~ 1534219 (-) True XLOC_008912
TCONS_00019111 lncRNA downstream 661754 1140445 ~ 1143069 (-) True XLOC_008908
TCONS_00017624 lncRNA upstream 7722 1830270 ~ 1834822 (-) False XLOC_008922
TCONS_00017629 lncRNA upstream 32475 1855023 ~ 1885239 (-) True XLOC_008923
TCONS_00017640 lncRNA upstream 501118 2323666 ~ 2328145 (-) False XLOC_008928
TCONS_00019112 lncRNA upstream 501118 2323666 ~ 2328284 (-) True XLOC_008928
TCONS_00017644 lncRNA upstream 695235 2517783 ~ 2519603 (-) True XLOC_008930
TCONS_00017617 mRNA downstream 39686 1749843 ~ 1765137 (-) False XLOC_008920
TCONS_00017618 mRNA downstream 39725 1756141 ~ 1765098 (-) True XLOC_008920
TCONS_00017616 mRNA downstream 57860 1734453 ~ 1746963 (-) True XLOC_008919
TCONS_00017615 mRNA downstream 59415 1734444 ~ 1745408 (-) False XLOC_008919
TCONS_00017614 mRNA downstream 71564 1727491 ~ 1733259 (-) True XLOC_008918
TCONS_00017622 mRNA upstream 2624 1825172 ~ 1844048 (-) False XLOC_008922
TCONS_00017623 mRNA upstream 6578 1829126 ~ 1835189 (-) False XLOC_008922
TCONS_00017625 mRNA upstream 7880 1830428 ~ 1843831 (-) False XLOC_008922
TCONS_00017626 mRNA upstream 8616 1831164 ~ 1843839 (-) False XLOC_008922
TCONS_00017628 mRNA upstream 24587 1847135 ~ 1885247 (-) False XLOC_008923
TCONS_00017597 other downstream 482917 1321790 ~ 1321906 (-) True XLOC_008910
TCONS_00017537 other downstream 1379067 425695 ~ 425756 (-) True XLOC_008873
TCONS_00017535 other downstream 1455256 349451 ~ 349567 (-) True XLOC_008870
TCONS_00017627 other upstream 12423 1834971 ~ 1837883 (-) True XLOC_008922
TCONS_00017639 other upstream 443421 2265969 ~ 2266083 (-) True XLOC_008927
TCONS_00017647 other upstream 802480 2625028 ~ 2625663 (-) True XLOC_008933
TCONS_00017655 other upstream 913835 2736383 ~ 2736498 (-) True XLOC_008940
TCONS_00017689 other upstream 2281860 4104408 ~ 4104526 (-) True XLOC_008968

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000091_00465845_00496451.mRNA True 2531 mRNA 0.43 8 CI01000091 464996 ~ 496600 (-)