RNA id: TCONS_00017622


Basic Information

Item Value
RNA id TCONS_00017622
length 2083
RNA type mRNA
GC content 0.50
exon number 16
gene id XLOC_008922
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 1825172 ~ 1844048 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAAGTTCGTACCACTTTTCAGGAGACGGGGGTTTTCATCAAAATACATTTCACTTTATGTACTTTGTAACTTTATAGTTTGCATTGCTCTGTTGTCCGACgtgcaataaaacaatatttatgtaTTTCTCTGCTATGTTTTATTCGCTGCGGGTGCTAAATAAACGAACTCAGTTTAGGCATTCCCGCTAAGTTGACGGTACTCTCCAGTGTCGGGTCAAGGTTCATAAGAGCTGCAGTGCGTGTTTCGCTCGTGCCgggtttttaatttctttattttggaATAGGtggtcatttcattttatttccctGCGAACGATGGCCTCAGattCAGGCTACGGTCACCCTGGCTCTCAGCAGAGCTATGGCGGATATGGTGGATCCCAGGGTTATCAAGGTGGACAGcaGGGATATGGACAGGGTAATGGAAGCGGAAGTTACAGCGAACAGAGCTATGGTGGTTATGGGCAGTCTGGTGGAGACAGTTATGGTCAGTCATCGCAGGGATATTCCTCTGGTGGTTATGGCCAACAGCAGCAGGGCTCTGACAGTTATGGACAACAGGGTTCTGAATCCTCGTCTGGGTATGGGGATAAATCCTATGGCCAGCAGCGCTCTTACGGACAGCAGTcaagtggtggtggtggtggaggaGGGTATGGGCAATCCAGTGGCTCATATGGAGGCTCTCAAGGTGGCTACGGGAGACGCAATGATGGGGACAGCCGCAgatttggagatgatgaaggctCTGACCGGTCTGAGGGTTACAGGGGTCGGGGGCGTGGAGGTTATGACCGCGGAGGCTATGACAGAGGTGGCCGCGGAGGCCCACCCTCCGGTATGGGTGGTGGTGACCGTGGTGGCTACAAAAATTACGGTGGACCCAAAGACTACGGCCAGAAGGATGACGATGGCGATCAGGATAACTCGGACAATAATACCATCTTTGTCCAGGGTCTTGGGGAGGATGTCAATGCTCAGGAAGTGGGTGACTATTTCAAGCAAATCGGGATCATAAAGGTCAACAAGAAGACTGGCAAGCCTATGATCAATCTGTACTCTGATAAAGCCACGGGACGCCTGAAGGGTGAAGCCACGGTCTCATTTGATGACCCGCCCTCGGCCAAAGCAGCCATTGATTGGTTTGATGGAAAAGAGTTTAATGGTAGACCCATCAAGGTGTCGTTTGCTACCAGAAGGGCTGAGTTCACTCAGAGAGGAGGTGGAAGCGGTGGCCGAGGGGGTCGTGGTGGTTTTCGAGGCcgaggtggtggtggtggtggtggcggCGGCGGCGGCTTTGGTGGTGGTCCGTCATTTGATGTCCGGGGTGGAGACTGGCCTTGTCCTAACAGTTCTTGTGGCAACATGAACTTCGCCAGGCGATATGAATGCAACCGGTGTGGTACACCGAAGCCAGAAGGGGACAGTTTCGGTGGTGGTGGCGGCGGCAGTGATCGCGGCAGCCGCGGTGGCTATGGAGGAGATCACGGGGACCGCGGCGGCGGCTTCAGAGGTGGGAGAGGAGGTGGATTTAGAGGAGGAGATCGTGGAGGCGGAGGATACAAAATGGGTGGAAGGGGAGACCACAGAGATGATAGACGTGGCCGGCCATACTGAAGACCTGTTTAGATGCCATTCCAGACCTTTATTGCGGGGTGGGGGTACGGGGGGTTTGGGGAGAGGTTCGTGTCTGCATACCTTTGTTGCATGAGTGTCCTGCATATACTGTCTGAGCGGAGCCGTTTTTCCCATACATGTTCAATCTACTGTGAGGATGATGATCTGAGCTGCAGCATTGAAAACCTTCAGTCCTGTAAGGAGTTTCCAAAACCCGGCGACAGATCCGCTTTAAAGGATGTTTTGCTCTAGTATGATGGGGAAATTGGGCCAGATgttatttttgttactttttaattTCCTAACTGTTCAATCCGgcgtttagtgtgtgtgtgtgatggattTGTGAAATGCTTATGATTTTGTAAAAATCAATCAACACAAACTGTTTTACtggtttcttttgtttgtttttttccccttttgcaaaaaatattaaacacccTTTTGATCTTAATGTG

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003712 transcription coregulator activity molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03022 Basal transcription factors
ko05202 Transcriptional misregulation in cancer
ko03021 Transcription machinery
ko03019 Messenger RNA biogenesis

ZFIN:

id description
ZDB-GENE-061215-102 Predicted to enable RNA binding activity and transcription coregulator activity. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in chondrosarcoma and extraskeletal myxoid chondrosarcoma. Orthologous to human TAF15 (TATA-box binding protein associated factor 15).

Ensembl:

ensembl_id ENSDART00000102410

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00017613 lncRNA downstream 99688 1721587 ~ 1725484 (-) False XLOC_008918
TCONS_00017607 lncRNA downstream 213479 1606849 ~ 1611693 (-) False XLOC_008915
TCONS_00017604 lncRNA downstream 234377 1589813 ~ 1590795 (-) False XLOC_008914
TCONS_00017602 lncRNA downstream 290953 1523472 ~ 1534219 (-) True XLOC_008912
TCONS_00019111 lncRNA downstream 682103 1140445 ~ 1143069 (-) True XLOC_008908
TCONS_00017629 lncRNA upstream 10975 1855023 ~ 1885239 (-) True XLOC_008923
TCONS_00017640 lncRNA upstream 479618 2323666 ~ 2328145 (-) False XLOC_008928
TCONS_00019112 lncRNA upstream 479618 2323666 ~ 2328284 (-) True XLOC_008928
TCONS_00017644 lncRNA upstream 673735 2517783 ~ 2519603 (-) True XLOC_008930
TCONS_00018809 lncRNA upstream 746333 2590381 ~ 2596121 (-) True XLOC_008931
TCONS_00017619 mRNA downstream 2624 1778773 ~ 1822548 (-) False XLOC_008921
TCONS_00017620 mRNA downstream 2624 1804823 ~ 1822548 (-) False XLOC_008921
TCONS_00017621 mRNA downstream 3006 1812565 ~ 1822166 (-) True XLOC_008921
TCONS_00017617 mRNA downstream 60035 1749843 ~ 1765137 (-) False XLOC_008920
TCONS_00017618 mRNA downstream 60074 1756141 ~ 1765098 (-) True XLOC_008920
TCONS_00017628 mRNA upstream 3087 1847135 ~ 1885247 (-) False XLOC_008923
TCONS_00017630 mRNA upstream 53327 1897375 ~ 2010926 (-) False XLOC_008924
TCONS_00017631 mRNA upstream 58900 1902948 ~ 1941042 (-) False XLOC_008924
TCONS_00017632 mRNA upstream 86940 1930988 ~ 1941184 (-) False XLOC_008924
TCONS_00017633 mRNA upstream 110485 1954533 ~ 1962326 (-) False XLOC_008924
TCONS_00017597 other downstream 503266 1321790 ~ 1321906 (-) True XLOC_008910
TCONS_00017537 other downstream 1399416 425695 ~ 425756 (-) True XLOC_008873
TCONS_00017535 other downstream 1475605 349451 ~ 349567 (-) True XLOC_008870
TCONS_00017639 other upstream 421921 2265969 ~ 2266083 (-) True XLOC_008927
TCONS_00017647 other upstream 780980 2625028 ~ 2625663 (-) True XLOC_008933
TCONS_00017655 other upstream 892335 2736383 ~ 2736498 (-) True XLOC_008940
TCONS_00017689 other upstream 2260360 4104408 ~ 4104526 (-) True XLOC_008968
TCONS_00017694 other upstream 2521110 4365158 ~ 4365272 (-) True XLOC_008973

Expression Profile

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