RNA id: TCONS_00017635


Basic Information

Item Value
RNA id TCONS_00017635
length 1132
RNA type mRNA
GC content 0.43
exon number 1
gene id XLOC_008925
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 2051128 ~ 2052259 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tttttacagtgcatattatgtaaatgtatgtatattgCTATGTTCATTTTGTACAACTGACTGATTTGTGTGCAAATCTGACTTATGTTCATCTATCCAGTTGACAAAATGGCAGCAAACGAGACTGATGTGTATGCTGAAAATGTGTTCCTCTGCTTTCCGCTTCGCCTAGACTCCTGCCTCAGTGCGCAGCGCCTTACTACAGTGAAGGTGGCTATGTACATATTAATGCTTCTCATTATATTTCTAACAGTTTTCGGCAACCTGCTGGTCGTCGTCTCCATCTCATACTTTAAACATCTGCAGTCTCCAACTCATCTGATCGTTCAGTCTCTGGCTGCATGCGACTGTCTCCTGGGCTCTTTGGTCATGCCTTACAGCATGGTGAGATCTATTGAAGGGTGCTGGTATTTAGGAGACGTTATTTGTAAAGTGCATTCAAGCTTGGACATGACTCTCTCAATCTCTTCTAAAATGCACCTGAGTTTAATATCCGTGGACAGGTACTGGGCAATCTGTGACCCTTTAATGTACAGAACGAGAGTCACAAATTACAGCATAACTGTGTTTATTATGTGTGCGTGGCTGTTTGCGTTTGTGTACAGCTTTTCCATTGTGTTTTCAGAGGTGAATCTGATAGGTCTGGAAGTACTCGTCTTACAAATATCCTGTTTGGGAAGTTGCGTACTTTTATTCAACAAACCCTCAGCTCTTATTTGCTCGATTCTGACATTTTTCCTGCCCGGTGCTATTATGAGCTCTCTGTATGTAAAGATCTTTCGCGTTGCGAGCAAACACGCAAAGGTTTTATCAGAAAGAGTCTCTGTGTTGGAGATTAAGAGCCAGACGTACGCGCAGAGAGAAAGAAAGGCTGCCAAAATAGTGGCCATTGTCGTAGGTGCTTTTTTGTTATGCTGGCTGCCTTTTTTTGTGGCCACTGCTCTCGACCCCTTCCTCGATTTCTGGACTCCGGCTGATGTCTTTGATGCTTTGGTTTGGTTCGGGTATTTTAATTCCACCTGTAACCCATTGATATATGGCTTTTTTTATCCACGCTTTCAGAAGGCATTCAAAATCCTGATGTCGACTGTTATGTGTGGATCCAGCAGCTCCAGAACACTGGCGTTTGGAT

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007187 G protein-coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger biological_process
GO:0007198 adenylate cyclase-inhibiting serotonin receptor signaling pathway biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0030425 dendrite cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0001594 trace-amine receptor activity molecular_function
GO:0030594 neurotransmitter receptor activity molecular_function
GO:0004993 G protein-coupled serotonin receptor activity molecular_function
GO:0051378 serotonin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-100506-1 Predicted to enable G protein-coupled serotonin receptor activity; neurotransmitter receptor activity; and serotonin binding activity. Predicted to be involved in G protein-coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger; adenylate cyclase-inhibiting serotonin receptor signaling pathway; and chemical synaptic transmission. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in dendrite. Predicted to be integral component of plasma membrane. Orthologous to human TAAR2 (trace amine associated receptor 2) and TAAR3P (trace amine associated receptor 3, pseudogene).

Ensembl:

ensembl_id ENSDART00000167703

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00017629 lncRNA downstream 165889 1855023 ~ 1885239 (-) True XLOC_008923
TCONS_00017624 lncRNA downstream 216306 1830270 ~ 1834822 (-) False XLOC_008922
TCONS_00017613 lncRNA downstream 325644 1721587 ~ 1725484 (-) False XLOC_008918
TCONS_00017607 lncRNA downstream 439435 1606849 ~ 1611693 (-) False XLOC_008915
TCONS_00017604 lncRNA downstream 460333 1589813 ~ 1590795 (-) False XLOC_008914
TCONS_00017640 lncRNA upstream 271407 2323666 ~ 2328145 (-) False XLOC_008928
TCONS_00019112 lncRNA upstream 271407 2323666 ~ 2328284 (-) True XLOC_008928
TCONS_00017644 lncRNA upstream 465524 2517783 ~ 2519603 (-) True XLOC_008930
TCONS_00018809 lncRNA upstream 538122 2590381 ~ 2596121 (-) True XLOC_008931
TCONS_00017646 lncRNA upstream 546545 2598804 ~ 2611170 (-) True XLOC_008932
TCONS_00017630 mRNA downstream 40202 1897375 ~ 2010926 (-) False XLOC_008924
TCONS_00017634 mRNA downstream 58562 1969561 ~ 1992566 (-) True XLOC_008924
TCONS_00017633 mRNA downstream 88802 1954533 ~ 1962326 (-) False XLOC_008924
TCONS_00017632 mRNA downstream 109944 1930988 ~ 1941184 (-) False XLOC_008924
TCONS_00017631 mRNA downstream 110086 1902948 ~ 1941042 (-) False XLOC_008924
TCONS_00017636 mRNA upstream 129844 2182103 ~ 2188422 (-) False XLOC_008926
TCONS_00017637 mRNA upstream 130281 2182540 ~ 2184638 (-) False XLOC_008926
TCONS_00017638 mRNA upstream 130432 2182691 ~ 2188332 (-) True XLOC_008926
TCONS_00017641 mRNA upstream 437945 2490204 ~ 2497568 (-) False XLOC_008929
TCONS_00017642 mRNA upstream 437976 2490235 ~ 2493771 (-) True XLOC_008929
TCONS_00017627 other downstream 213245 1834971 ~ 1837883 (-) True XLOC_008922
TCONS_00017597 other downstream 729222 1321790 ~ 1321906 (-) True XLOC_008910
TCONS_00017537 other downstream 1625372 425695 ~ 425756 (-) True XLOC_008873
TCONS_00017535 other downstream 1701561 349451 ~ 349567 (-) True XLOC_008870
TCONS_00017639 other upstream 213710 2265969 ~ 2266083 (-) True XLOC_008927
TCONS_00017647 other upstream 572769 2625028 ~ 2625663 (-) True XLOC_008933
TCONS_00017655 other upstream 684124 2736383 ~ 2736498 (-) True XLOC_008940
TCONS_00017689 other upstream 2052149 4104408 ~ 4104526 (-) True XLOC_008968
TCONS_00017694 other upstream 2312899 4365158 ~ 4365272 (-) True XLOC_008973

Expression Profile

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