RNA id: TCONS_00017636


Basic Information

Item Value
RNA id TCONS_00017636
length 1684
RNA type mRNA
GC content 0.49
exon number 5
gene id XLOC_008926
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 2182103 ~ 2188422 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCGCGCGGATCAAGGGGCAGACGCTTCGCTAAGTATAAATAGTGTGACTTCAATAGTGAATCGGCAGCAAGTCTGTATACACTCTCCGCAACAAGAGGAATTGTCAAAGATCTCATCATCACACCATCATCTCGCATTTAGGccgatagaaagagagagagcgcgcgCGCTGTTCCCGTTCTTATGGTAGTCTGCTAAGGATCTAAAAGGAAGATTGTgtggggcttttttttttcttcttcttcgttCTTCTTGGGTGCAGTGATGGAAGAACTTACAGCGTTTGTCTCTAAATCTTTTGATCAGAAAGTGAAGGAGAAGAAGGAAGTGATCACGTACCGGGAGGTGTTGGAAACCGGTTCGGTGAGGAACCGGGAGAGTCTGTCGGCGGATCCAAACCGCGAGGAAATCAGCAGCATCACGCGGAGCGGAGTGCGCTCATCGCCGGTCAGGGAAGCGGACATGCTCGCGTCAGAGAGAAGCAGAGACTCGAGCAGTCCTAAACTTACAGACGGTAATACAGATATGAAGGAACGCAAAGAGGATTGTAAGCCGCTGGAGGATGAGACACAGACTAAAATCAAGCAGAGAAGGAGTCGGACTAACTTTACCCTTGAGCAGCTCAATGAGCTGGAGAGACTGTTCGATGAAACGCACTATCCGGACGCCTTCATGAGAGAGGAGCTGAGCCAGAGACTCGGGCTGTCGGAGGCCAGGGTGCAGGTTTGGTTTCAGAACCGAAGGGCTAAATGCAGAAAGCAGGAAAATCAGTTGCATAAAGGGGTTCTCATCGGAGCGGCGAGCCAGTTTGAAGCATGTCGCGTGGCTCCATATGTCAACGTGGGAGCTCTGCGCATGCCCTTTCAGCAGGATAGTCATTGCAACGTGCCGCCCTTCTCCTTTCAGGTGCAGGCGCAGCTGCAGCTGGACAGCGCCGTGGCTCACGCGCATCATCACCTGCACTCGCACCTGGCTGCGCATGCGCCGTACATGATGTTTCCCGCGCCGCCGTTCGGGTTGCCCCTGGCGACGCTCGCAGCGGAATCCGCGTCGGCGGCGTCGGTGGTGGCGGCAGCCGCCGCCGCGAAAACCACCAACAAAAACTCCAGCATCGCGGATCTGAGACTGAAGGCGAAAAAGCACGCCGCGGCTCTGGGACTGTGACGTCACATTGCATTGAACGACGGCATATCGACGTTAACCACAGACAATAAACGCAAATTTTCGTATGAAGGACACGCAAGAAGGAGAGGCTATTTATAAAGACAAACTGTGAAATGGAGAAACATTTCGTGGATCTTCACAAGGATGGAAACAACTGCAAGATGCAGAACTATACGAGAAAATAAAGCTGAACTTAAAGcgaacagaactttttttttgtgcagaACACGAGAGGTTTGAATCCGAAAATAATGATATAAAGCAGCTGGGACAGTTGTGTGACAACGCGGACATTTCTGCTTTAACACGTTATtagtaattaatgaaaataaagaggCTGGCCTCGTTTATTTGAAACAAAGTTTCTTTGTGGATATTTGTGAAATATTACAGAAATACCTTTTGTTGCCAAATCATGAAAACTCCAGTGTTAAAAACCCCCCATTTCCGTCCTCACGGATGACACACACTTTACATGCTCTCTGGTTtatgaaactaaataaatgagCATTAAATGAAA

Function

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0008016 regulation of heart contraction biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1457 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and sequence-specific double-stranded DNA binding activity. Acts upstream of or within heart development and regulation of heart contraction. Predicted to be active in nucleus. Is expressed in apical ectodermal ridge pectoral fin bud; heart; nervous system; and pectoral fin. Human ortholog(s) of this gene implicated in lung cancer. Orthologous to human SHOX2 (short stature homeobox 2).

Ensembl:

ensembl_id ENSDART00000009564

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00017629 lncRNA downstream 296864 1855023 ~ 1885239 (-) True XLOC_008923
TCONS_00017624 lncRNA downstream 347281 1830270 ~ 1834822 (-) False XLOC_008922
TCONS_00017613 lncRNA downstream 456619 1721587 ~ 1725484 (-) False XLOC_008918
TCONS_00017607 lncRNA downstream 570410 1606849 ~ 1611693 (-) False XLOC_008915
TCONS_00017604 lncRNA downstream 591308 1589813 ~ 1590795 (-) False XLOC_008914
TCONS_00017640 lncRNA upstream 135244 2323666 ~ 2328145 (-) False XLOC_008928
TCONS_00019112 lncRNA upstream 135244 2323666 ~ 2328284 (-) True XLOC_008928
TCONS_00017644 lncRNA upstream 329361 2517783 ~ 2519603 (-) True XLOC_008930
TCONS_00018809 lncRNA upstream 401959 2590381 ~ 2596121 (-) True XLOC_008931
TCONS_00017646 lncRNA upstream 410382 2598804 ~ 2611170 (-) True XLOC_008932
TCONS_00017635 mRNA downstream 129844 2051128 ~ 2052259 (-) True XLOC_008925
TCONS_00017630 mRNA downstream 171177 1897375 ~ 2010926 (-) False XLOC_008924
TCONS_00017634 mRNA downstream 189537 1969561 ~ 1992566 (-) True XLOC_008924
TCONS_00017633 mRNA downstream 219777 1954533 ~ 1962326 (-) False XLOC_008924
TCONS_00017632 mRNA downstream 240919 1930988 ~ 1941184 (-) False XLOC_008924
TCONS_00017641 mRNA upstream 301782 2490204 ~ 2497568 (-) False XLOC_008929
TCONS_00017642 mRNA upstream 301813 2490235 ~ 2493771 (-) True XLOC_008929
TCONS_00017643 mRNA upstream 322339 2510761 ~ 2519640 (-) False XLOC_008930
TCONS_00017645 mRNA upstream 401527 2589949 ~ 2596125 (-) False XLOC_008931
TCONS_00017648 mRNA upstream 442999 2631421 ~ 2632891 (-) True XLOC_008934
TCONS_00017627 other downstream 344220 1834971 ~ 1837883 (-) True XLOC_008922
TCONS_00017597 other downstream 860197 1321790 ~ 1321906 (-) True XLOC_008910
TCONS_00017537 other downstream 1756347 425695 ~ 425756 (-) True XLOC_008873
TCONS_00017535 other downstream 1832536 349451 ~ 349567 (-) True XLOC_008870
TCONS_00017639 other upstream 77547 2265969 ~ 2266083 (-) True XLOC_008927
TCONS_00017647 other upstream 436606 2625028 ~ 2625663 (-) True XLOC_008933
TCONS_00017655 other upstream 547961 2736383 ~ 2736498 (-) True XLOC_008940
TCONS_00017689 other upstream 1915986 4104408 ~ 4104526 (-) True XLOC_008968
TCONS_00017694 other upstream 2176736 4365158 ~ 4365272 (-) True XLOC_008973

Expression Profile

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