RNA id: TCONS_00017640


Basic Information

Item Value
RNA id TCONS_00017640
length 1185
lncRNA type intronic
GC content 0.37
exon number 3
gene id XLOC_008928
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 2323666 ~ 2328284 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGACTCCCTATTGTTTGTTGTGTGCAATTAGGATCAATTCCCTCTTCGTTTCTTAGCTAAAGTGCATGTTTTCTTTGGCTTGGCTGAGGATGTGTTAAACGGATGAGAGGAGAGTCtgccgacgcacacgatgagctgactggacaaacttATTGCgatgggaaagccctccacacagagAACACAAGGCACCCAGAAGCAGCCAGGGAAAAGCTGCCAGCAAGCTTGTGTTGGTCGTACCCTAAGGCTTGTGCACCCCAGAGCCCCAAATCTCTGAAGATCCACTAGCCCCCATCGATCCCTTTTACAGCTCCTGAATAATAAATTCCAGCCCCCCTCGGTCCCGCACAAAAGCCCGACAGGGCCTGGGGTTGGGCTTAAACCCCACTAATTACATCAGCACTGAAAGGAAATCATTGATCAACGGCATTGTGAGACACTCAACTGCCAACCAGAACTGAATCAATGAAATCAATGAGCAGCTTCTCAAGACGTCTGACCATCTGGGTTTCAAATCATGTTTTTACACTAACAATATGAAGCAGAATAAATAAGACATTTGGGGAAcgctttagtttaagtaacaatccCCACCATTACCTACTTATAAAGAATGAatgacttattttacatccctaatacaACCTGATACCTAACCTACTACTGTACTAACCCCAACTACTACCACACTGACTAATAATAAGCAGCTATTTTTTAGTTAATTGAGCTAGAAGTCTTAGTGAATGGTTTGTTGATAAGAAGAATTGCACATTAAAATAGTCCGACATAAGCGAAGTAAGTGTGACCAACATTTGGATGCTTTTGAAGAAAACCAGCTGTATCTAATATAGCATTTTATTAACCAGAAATACAGTATTCAATATTCTTTAAACACTTTGAATATATCTGCATTTCTTGACattgtaaaattaattttaaaatggtcacactttattttaatgttaaatgaaATTAAGTAAAATTATGTGATTTTACTGTGTATGTAATGTTacatataataaacataacataatgtaatatatattatatacaagtacatccaggaggttgttatcacagaataaagcctgaaTGGCATATCGGTAGACTGAAgggcattgtaaaaaaaataaacgttattttacaggtaattgtattattattattttttacagaattttcca

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00017629 lncRNA downstream 438427 1855023 ~ 1885239 (-) True XLOC_008923
TCONS_00017624 lncRNA downstream 488844 1830270 ~ 1834822 (-) False XLOC_008922
TCONS_00017613 lncRNA downstream 598182 1721587 ~ 1725484 (-) False XLOC_008918
TCONS_00017607 lncRNA downstream 711973 1606849 ~ 1611693 (-) False XLOC_008915
TCONS_00017604 lncRNA downstream 732871 1589813 ~ 1590795 (-) False XLOC_008914
TCONS_00017644 lncRNA upstream 189638 2517783 ~ 2519603 (-) True XLOC_008930
TCONS_00018809 lncRNA upstream 262236 2590381 ~ 2596121 (-) True XLOC_008931
TCONS_00017646 lncRNA upstream 270659 2598804 ~ 2611170 (-) True XLOC_008932
TCONS_00019113 lncRNA upstream 290134 2618279 ~ 2625928 (-) False XLOC_008933
TCONS_00019114 lncRNA upstream 485371 2813516 ~ 2816142 (-) True XLOC_008942
TCONS_00017636 mRNA downstream 135244 2182103 ~ 2188422 (-) False XLOC_008926
TCONS_00017638 mRNA downstream 135334 2182691 ~ 2188332 (-) True XLOC_008926
TCONS_00017637 mRNA downstream 139028 2182540 ~ 2184638 (-) False XLOC_008926
TCONS_00017635 mRNA downstream 271407 2051128 ~ 2052259 (-) True XLOC_008925
TCONS_00017630 mRNA downstream 312740 1897375 ~ 2010926 (-) False XLOC_008924
TCONS_00017641 mRNA upstream 162059 2490204 ~ 2497568 (-) False XLOC_008929
TCONS_00017642 mRNA upstream 162090 2490235 ~ 2493771 (-) True XLOC_008929
TCONS_00017643 mRNA upstream 182616 2510761 ~ 2519640 (-) False XLOC_008930
TCONS_00017645 mRNA upstream 261804 2589949 ~ 2596125 (-) False XLOC_008931
TCONS_00017648 mRNA upstream 303276 2631421 ~ 2632891 (-) True XLOC_008934
TCONS_00017639 other downstream 57583 2265969 ~ 2266083 (-) True XLOC_008927
TCONS_00017627 other downstream 485783 1834971 ~ 1837883 (-) True XLOC_008922
TCONS_00017597 other downstream 1001760 1321790 ~ 1321906 (-) True XLOC_008910
TCONS_00017537 other downstream 1897910 425695 ~ 425756 (-) True XLOC_008873
TCONS_00017535 other downstream 1974099 349451 ~ 349567 (-) True XLOC_008870
TCONS_00017647 other upstream 296883 2625028 ~ 2625663 (-) True XLOC_008933
TCONS_00017655 other upstream 408238 2736383 ~ 2736498 (-) True XLOC_008940
TCONS_00017689 other upstream 1776263 4104408 ~ 4104526 (-) True XLOC_008968
TCONS_00017694 other upstream 2037013 4365158 ~ 4365272 (-) True XLOC_008973
TCONS_00017700 other upstream 2098349 4426494 ~ 4482147 (-) False XLOC_008974