RNA id: TCONS_00017641


Basic Information

Item Value
RNA id TCONS_00017641
length 1411
RNA type mRNA
GC content 0.49
exon number 4
gene id XLOC_008929
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 2490204 ~ 2497568 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCTTGCGACCTCTTGCTCTCACTCATCTGACACTCATCTCATTACTCTGCATTAGAGCGTGTCCTGCCTGTTTGCTATATATGAGGCTATGGGGTCTCAATACTACCCAGCACGATCCATACTTTTCCAAAAGGAGCCGAGTGGAGTTACATACCGTGTGCCAGCTCTGATCTACATCCCTCGCTCCAGCTGTTTCTTGGCCTTCTGTGAGGAGAGACTGACTCCAGCAGACGCTCAAGCACATCTGCTGGTCATGCGCAAAGGGACGTTTTACAAAAACTATGTGGAATGGAAAGACATGGAGGTGCTCAGTACAGCTCGACTGGAGGGCTACCGATCCATGAACCCATGCCCCGTTTATGACGAGTTTACTGACACGATCTTCTTGTTTTTTATTGCTGTCCTGGGGCACACTTCTGAGTCTTATCAGCTAATTACAGGAAAAAACGTGACGCGTCTTTGTTACGTTTCCAGCTGTGACCAGGGGGACACCTGGAGCAACGCTACAGATCTCACCAGGACACTGATAGGGGACACTATAAAAGAGTGGGCCACTTTTGCTGTTGGTCCAGGTCACGGAACGCAGTTGAAATCTGGAAGGCTAATAATCCCTGCATATGCCTACCACATTGACTGCAGAAACTGCTTCGGCAAGACGTGCAAGACCTCGCCACACtcgttttgtttttacagtgacaCACATGGAAACGTGTGGCATTTTGGACAGGCGTTGTCTGAGCCTAACAGTGTGGAGTGTCAGATGGTGTCAGTGGATGAAGAAGATGGAGTCAACCTTTTGTACTGTAATGCGCGTAGCATTTCAGGCTACCGGGTGCAAGCTGTCAGCTTTGATCATGGAACTTTCTTTCAAGATGGCCAGCTGGTGCACAAACTACTGGAACCCAGAAACGGGTGCCATGGCAGCGTGATCGGATTTCCAGCCCCAATCTTCCAGCTCGAGCGGTTTAAGTCCATCTACAACTCACTTGAACTCAGCGCAGCTCCGAGGTCTCCAAAGAACTTCCTTCCACCAACATGGGTAGTATATAGTCACCCAACCTGTCCAAATTCCCGTCGTGACCTGGGGGTTTACCTCAGTCTTCTGCCTCGAGACCCAGACAGTTGGTCAGGACCTTGGATTATATATGACGGCCCTAGTGCATACTCAGACTTGGCGTATGTTGACCTGATGTCTTCTGATGCCGCAGGGGTCACCGTCTTTGCCTGTCTCTTTGAAAGCGGCACCAAGACAGCTTATGATGAGATTTCCTTCTGCATATTCACACTGTATGAGCTCATTGACCACCTTCCCCAAGACCAAGAAAAAACAACATTGCTGAAGAGGAAACGAATCTGGGAGCGCTGCTTTATCTGCTGATTATATGCCAATCTCTGTTGAGTAGAAATCAGA

Function

GO:

id name namespace
GO:0009313 oligosaccharide catabolic process biological_process
GO:0006689 ganglioside catabolic process biological_process
GO:0001573 ganglioside metabolic process biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0016020 membrane cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004308 exo-alpha-sialidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050522-125 Enables exo-alpha-sialidase activity. Acts upstream of or within ganglioside metabolic process. Located in endoplasmic reticulum. Is expressed in several structures, including heart; integument; lens; pleuroperitoneal region; and solid lens vesicle. Orthologous to human NEU4 (neuraminidase 4).

Ensembl:

ensembl_id ENSDART00000080398

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019112 lncRNA downstream 161920 2323666 ~ 2328284 (-) True XLOC_008928
TCONS_00017640 lncRNA downstream 162059 2323666 ~ 2328145 (-) False XLOC_008928
TCONS_00017629 lncRNA downstream 604965 1855023 ~ 1885239 (-) True XLOC_008923
TCONS_00017624 lncRNA downstream 655382 1830270 ~ 1834822 (-) False XLOC_008922
TCONS_00017613 lncRNA downstream 764720 1721587 ~ 1725484 (-) False XLOC_008918
TCONS_00017644 lncRNA upstream 20215 2517783 ~ 2519603 (-) True XLOC_008930
TCONS_00018809 lncRNA upstream 92813 2590381 ~ 2596121 (-) True XLOC_008931
TCONS_00017646 lncRNA upstream 101236 2598804 ~ 2611170 (-) True XLOC_008932
TCONS_00019113 lncRNA upstream 120711 2618279 ~ 2625928 (-) False XLOC_008933
TCONS_00019114 lncRNA upstream 315948 2813516 ~ 2816142 (-) True XLOC_008942
TCONS_00017636 mRNA downstream 301782 2182103 ~ 2188422 (-) False XLOC_008926
TCONS_00017638 mRNA downstream 301872 2182691 ~ 2188332 (-) True XLOC_008926
TCONS_00017637 mRNA downstream 305566 2182540 ~ 2184638 (-) False XLOC_008926
TCONS_00017635 mRNA downstream 437945 2051128 ~ 2052259 (-) True XLOC_008925
TCONS_00017634 mRNA downstream 497638 1969561 ~ 1992566 (-) True XLOC_008924
TCONS_00017643 mRNA upstream 13193 2510761 ~ 2519640 (-) False XLOC_008930
TCONS_00017645 mRNA upstream 92381 2589949 ~ 2596125 (-) False XLOC_008931
TCONS_00017648 mRNA upstream 133853 2631421 ~ 2632891 (-) True XLOC_008934
TCONS_00017649 mRNA upstream 141316 2638884 ~ 2640966 (-) True XLOC_008935
TCONS_00017650 mRNA upstream 153219 2650787 ~ 2652640 (-) True XLOC_008936
TCONS_00017639 other downstream 224121 2265969 ~ 2266083 (-) True XLOC_008927
TCONS_00017627 other downstream 652321 1834971 ~ 1837883 (-) True XLOC_008922
TCONS_00017597 other downstream 1168298 1321790 ~ 1321906 (-) True XLOC_008910
TCONS_00017537 other downstream 2064448 425695 ~ 425756 (-) True XLOC_008873
TCONS_00017535 other downstream 2140637 349451 ~ 349567 (-) True XLOC_008870
TCONS_00017647 other upstream 127460 2625028 ~ 2625663 (-) True XLOC_008933
TCONS_00017655 other upstream 238815 2736383 ~ 2736498 (-) True XLOC_008940
TCONS_00017689 other upstream 1606840 4104408 ~ 4104526 (-) True XLOC_008968
TCONS_00017694 other upstream 1867590 4365158 ~ 4365272 (-) True XLOC_008973
TCONS_00017700 other upstream 1928926 4426494 ~ 4482147 (-) False XLOC_008974

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000092_04484800_04489910.mRNA True 3125 mRNA 0.43 3 CI01000092 4484233 ~ 4491148 (-)