RNA id: TCONS_00017644


Basic Information

Item Value
RNA id TCONS_00017644
length 464
lncRNA type retained_intron
GC content 0.39
exon number 2
gene id XLOC_008930
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 2510761 ~ 2519640 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTTCCATGTGTAGAGGAAAGCATGGAGGAAAGGGTTGATCTGGATTTAGAGGATTTCTCTTCAGAGCCGTTTTTGGAAACGTTCTTGAAAGAGATCCAGAATGAAGACGCTGTTTTCCTCGTCGGGATATTTGTAGCATTGGCGCTTGTGATTCTCACTATCGttttctttgggaatttttggGGCTCCAGTAAAGTGAGGAATGCAGTGCTGTTGCTGGGACTGTGTGACTCCGGGAAGACTCTTCTGTTCACTCGAGTGAGTAATTGTGGAGATTCTCTTTACACAGCATAAACGTTTGTACTCTTTCACACTATAAACTCGAGTTTTTGACTAAATCTTTTGAGAAATTGATTCTGTATCAATTCTgggatcatttattttatttaaatttgcacCACTATTTTTTCTTGAATCGATTCTgagcttattttttaaaagcagatggcgctgtatgaTTTAC

Function

GO:

id name namespace
GO:0045047 protein targeting to ER biological_process
GO:0005785 signal recognition particle receptor complex cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
ko03060 Protein export
ko02044 Secretion system
ko04031 GTP-binding proteins

ZFIN:

id description
ZDB-GENE-040718-311 Predicted to enable GTP binding activity. Predicted to be involved in protein targeting to ER. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of signal recognition particle receptor complex. Orthologous to human SRPRB (SRP receptor subunit beta).

Ensembl:

ensembl_id ENSDART00000157078

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019112 lncRNA downstream 189499 2323666 ~ 2328284 (-) True XLOC_008928
TCONS_00017640 lncRNA downstream 189638 2323666 ~ 2328145 (-) False XLOC_008928
TCONS_00017629 lncRNA downstream 632544 1855023 ~ 1885239 (-) True XLOC_008923
TCONS_00017624 lncRNA downstream 682961 1830270 ~ 1834822 (-) False XLOC_008922
TCONS_00017613 lncRNA downstream 792299 1721587 ~ 1725484 (-) False XLOC_008918
TCONS_00018809 lncRNA upstream 70778 2590381 ~ 2596121 (-) True XLOC_008931
TCONS_00017646 lncRNA upstream 79201 2598804 ~ 2611170 (-) True XLOC_008932
TCONS_00019113 lncRNA upstream 98676 2618279 ~ 2625928 (-) False XLOC_008933
TCONS_00019114 lncRNA upstream 293913 2813516 ~ 2816142 (-) True XLOC_008942
TCONS_00017662 lncRNA upstream 398654 2918257 ~ 2931021 (-) True XLOC_008946
TCONS_00017641 mRNA downstream 20215 2490204 ~ 2497568 (-) False XLOC_008929
TCONS_00017642 mRNA downstream 24012 2490235 ~ 2493771 (-) True XLOC_008929
TCONS_00017636 mRNA downstream 329361 2182103 ~ 2188422 (-) False XLOC_008926
TCONS_00017638 mRNA downstream 329451 2182691 ~ 2188332 (-) True XLOC_008926
TCONS_00017637 mRNA downstream 333145 2182540 ~ 2184638 (-) False XLOC_008926
TCONS_00017645 mRNA upstream 70346 2589949 ~ 2596125 (-) False XLOC_008931
TCONS_00017648 mRNA upstream 111818 2631421 ~ 2632891 (-) True XLOC_008934
TCONS_00017649 mRNA upstream 119281 2638884 ~ 2640966 (-) True XLOC_008935
TCONS_00017650 mRNA upstream 131184 2650787 ~ 2652640 (-) True XLOC_008936
TCONS_00017651 mRNA upstream 135963 2655566 ~ 2657508 (-) True XLOC_008937
TCONS_00017639 other downstream 251700 2265969 ~ 2266083 (-) True XLOC_008927
TCONS_00017627 other downstream 679900 1834971 ~ 1837883 (-) True XLOC_008922
TCONS_00017597 other downstream 1195877 1321790 ~ 1321906 (-) True XLOC_008910
TCONS_00017537 other downstream 2092027 425695 ~ 425756 (-) True XLOC_008873
TCONS_00017535 other downstream 2168216 349451 ~ 349567 (-) True XLOC_008870
TCONS_00017647 other upstream 105425 2625028 ~ 2625663 (-) True XLOC_008933
TCONS_00017655 other upstream 216780 2736383 ~ 2736498 (-) True XLOC_008940
TCONS_00017689 other upstream 1584805 4104408 ~ 4104526 (-) True XLOC_008968
TCONS_00017694 other upstream 1845555 4365158 ~ 4365272 (-) True XLOC_008973
TCONS_00017700 other upstream 1906891 4426494 ~ 4482147 (-) False XLOC_008974

Expression Profile

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