RNA id: TCONS_00017647


Basic Information

Item Value
RNA id TCONS_00017647
length 636
RNA type unprocessed_pseudogene
GC content 0.46
exon number 1
gene id XLOC_008933
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 2618279 ~ 2625928 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGATATAAAAATCGAGTTTGTTAGCTTTGGACTGGCGAGCGCCGGCTGGTTTTGCACCATTCTCACAAGATTTCTACCCATGTGGAACGTAAGCGGGATGGTGGAAAACACCACAACAACACTTCCATTGTATTGGGACGGCGTCTGGCTAAACTGGCAATACCACACGACAGGAAGAATCCATTGTGTCTTCTATCAGACCCTGCTCTCTCTAACAGAGCATTTTTTCCAGTGGAAAATCCTCCTGCTCACATCTATAGCCATGGGATTTATTGCTGTGGCGGTTTACCCTATAGGCTGGATACGCTATCCTAAGTACATACGGATTAAAGCTGCGTCGGGACCATGGTTTATTGCTAGTGCGCTTCCGTTACTGATTGTGATCTCCTGGACTACGCATTTAACCGAATTGAAGAGCGATGACTTGTCATTAACTAGTGAATTAGGAGCAGCGATCTTCACTGGCTGGATCGGTATGGTGTTTCTTGTTGTGGGTGGAGGAGTGCTGAGTTTTATCTGCTGTAAAGCAGTACGAAAGCAACAGGAGGATGGAAGACAACCACAAACTTCAGAACCAGGAGTTCAGGATCCACTTAACACCACACAGAGTTCTGCGATTATGCACAGCCCTTGA

Function

GO:

id name namespace
GO:0044281 small molecule metabolic process biological_process
GO:0006208 pyrimidine nucleobase catabolic process biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000126328

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00017646 lncRNA downstream 13858 2598804 ~ 2611170 (-) True XLOC_008932
TCONS_00018809 lncRNA downstream 28907 2590381 ~ 2596121 (-) True XLOC_008931
TCONS_00017644 lncRNA downstream 105425 2517783 ~ 2519603 (-) True XLOC_008930
TCONS_00019112 lncRNA downstream 296744 2323666 ~ 2328284 (-) True XLOC_008928
TCONS_00017640 lncRNA downstream 296883 2323666 ~ 2328145 (-) False XLOC_008928
TCONS_00019114 lncRNA upstream 187853 2813516 ~ 2816142 (-) True XLOC_008942
TCONS_00017662 lncRNA upstream 292594 2918257 ~ 2931021 (-) True XLOC_008946
TCONS_00019115 lncRNA upstream 489674 3115337 ~ 3116262 (-) True XLOC_008951
TCONS_00019116 lncRNA upstream 534775 3160438 ~ 3162459 (-) True XLOC_008952
TCONS_00019117 lncRNA upstream 1128903 3754566 ~ 3760957 (-) True XLOC_008957
TCONS_00017645 mRNA downstream 28903 2589949 ~ 2596125 (-) False XLOC_008931
TCONS_00017643 mRNA downstream 105388 2510761 ~ 2519640 (-) False XLOC_008930
TCONS_00017641 mRNA downstream 127460 2490204 ~ 2497568 (-) False XLOC_008929
TCONS_00017642 mRNA downstream 131257 2490235 ~ 2493771 (-) True XLOC_008929
TCONS_00017636 mRNA downstream 436606 2182103 ~ 2188422 (-) False XLOC_008926
TCONS_00017648 mRNA upstream 5758 2631421 ~ 2632891 (-) True XLOC_008934
TCONS_00017649 mRNA upstream 13221 2638884 ~ 2640966 (-) True XLOC_008935
TCONS_00017650 mRNA upstream 25124 2650787 ~ 2652640 (-) True XLOC_008936
TCONS_00017651 mRNA upstream 29903 2655566 ~ 2657508 (-) True XLOC_008937
TCONS_00017652 mRNA upstream 74983 2700646 ~ 2726662 (-) True XLOC_008938
TCONS_00017639 other downstream 358945 2265969 ~ 2266083 (-) True XLOC_008927
TCONS_00017627 other downstream 787145 1834971 ~ 1837883 (-) True XLOC_008922
TCONS_00017597 other downstream 1303122 1321790 ~ 1321906 (-) True XLOC_008910
TCONS_00017537 other downstream 2199272 425695 ~ 425756 (-) True XLOC_008873
TCONS_00017535 other downstream 2275461 349451 ~ 349567 (-) True XLOC_008870
TCONS_00017655 other upstream 110720 2736383 ~ 2736498 (-) True XLOC_008940
TCONS_00017689 other upstream 1478745 4104408 ~ 4104526 (-) True XLOC_008968
TCONS_00017694 other upstream 1739495 4365158 ~ 4365272 (-) True XLOC_008973
TCONS_00017700 other upstream 1800831 4426494 ~ 4482147 (-) False XLOC_008974
TCONS_00017702 other upstream 1809802 4435465 ~ 4482230 (-) False XLOC_008974

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000091_00390010_00390965.mRNA True 645 mRNA 0.42 2 CI01000091 389933 ~ 391062 (+)