RNA id: TCONS_00017651


Basic Information

Item Value
RNA id TCONS_00017651
length 1943
RNA type mRNA
GC content 0.37
exon number 1
gene id XLOC_008937
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 2655566 ~ 2657508 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTCTACAGACCAACGAATATTTTTGCTGTCTAATACACCTGCAATTGTTCCACCATGGTATCAGCAGGGCTGCAGATGGTGGGTATAGCCCTGGCAGTGATTGGCTGGATTGGGGTTATAGTGGTTTGCATTCTCCCCATGTGGCAAGTCACTGCTTTTATCGGACAGAACATCGTCACGGCGCAGGTTACCTGGGAAGGAATTTGGATGAGTTGCGTGGTGCAGAGCACCGGACAGATGCAGTGTAAAGTCTATGACTCCATGTTGGCTCTGAGCTCAGATCTTCAAGCCGCTCGAGCTTTGTGTATCATCTCCATCCTAGTCGGTGTTGTTGGAATCCTCCTCGCGGCGGCGGGAGGAAAATGCACCACCTGCATTGAAGAAGAACGTGCCAAGGCTAAAGTCTGCGTTATTTCTGGAGCCATCTTCATCGTGGCTGGAGTTCTGTGCTTGATTCCTGTTTGCTGGACTGCTAATAATATTATACGCGACTTCTACAACCCTATGACCAACAGCGCGCAAAAGAGGGAACTCGGAGCGTCGTTGTTTATTGGCTGGGGGGCTTCGGCGCTGTTGATTATTGGCGGGTCGTTGCTTTGTGCTAATTGCCCTCCACAAGACCAGTACAAGGCAACGTACACCGCTCGATCTGGAGGAACCAAGGGGTATGTCTGAGGAACCAAAAGTACTACATTCAAGGAGGATATTGGGTTTTTTATGTGTATTGGATGCTGGACAGCTTTTGAGGTGGTGTTGTTGTTGACTATGATCGTGAccgttattttatttaaaataacggTCGACATATTCAAAAACTGACGGTTGTTGTTTGTTCATGctacttaaaatgagctaaaacaagtGGAGCCAACTTAATTGTttgatgttcaatccacttaaatgtgtaaaaactattaagtgatcttaattcattcattcaacttgTTAAAATCAAAtctaatcgttttttttttacagtgtatgaggcATTGTGAAATACAATGAACATGTCAGGGTGCCTGCTTTGAATGGAATAAGTGTTCAAtaagtgttttaaattgtaaatatagtTTGTTTTACTTGGTATTTACTGTTCTTCAAGTGGTcttgtgagtttcttttttctcctCATCTCAATATTTTGTGGAATGTTTTAAAAcgcaactaggcatgggacgataaaggttttcaaggtataccgcggtttggaaaagtcaaggttttaaaacaattttttaaacaataaattaaatacatttttaataatttttaataatgttttttatttaccttttttaggacaacagcagaaaagatatccaaagatgccatttttaattgtaaaaaaaatcatttttttaaataaatcaagacAGCAGATGtaaacaatcatttattttaaggATTTATCCTGAAATGTTTactatttcaaaatatttcaaatgtttcttaaactaaaatatattgtgttgaaaagtgaaaaatgtgttttttacccaggcatttaaaaagaatatttttagagcagtaatcacaataagctttagtccaaggttatcatattgtcagaatcttataccagcccatgcctacctgtaaccactgacatccacagtaggaaaaacaaatactatggaagtcaatggttactagtttccagcattctttaaaatatcttcctttgtgttcaactgaaggaAGAAACTCATGTTAAGTGATCAAGTAGGCTacatgatgacaggattttcatttttgagtgaattgtTTCTTcaatttttcttgtttttactGAGAATCTCTTCAGAAGTGCTGAAACTGTACatgattttttattaaagttatctTTGATCATATTTTGCTTCAATCCTATTTTGAAATTGTGACTGATATGCCACAGAACATTTCAAATACAAGAATTTTATCGAATAaatcctttaaaaaca

Function

GO:

id name namespace
GO:0070830 bicellular tight junction assembly biological_process
GO:0007155 cell adhesion biological_process
GO:0005886 plasma membrane cellular_component
GO:0005923 bicellular tight junction cellular_component
GO:0030054 cell junction cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-010328-1 Predicted to enable structural molecule activity. Predicted to be involved in bicellular tight junction assembly and cell adhesion. Predicted to be located in cell junction and membrane. Predicted to be integral component of membrane. Predicted to be active in bicellular tight junction and plasma membrane. Is expressed in several structures, including gonad; nervous system; otic epithelium; otic vesicle; and spleen. Human ortholog(s) of this gene implicated in ovarian cancer and pancreatic cancer. Orthologous to human CLDN4 (claudin 4).

Ensembl:

ensembl_id ENSDART00000102086

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019113 lncRNA downstream 29638 2618279 ~ 2625928 (-) False XLOC_008933
TCONS_00017646 lncRNA downstream 44396 2598804 ~ 2611170 (-) True XLOC_008932
TCONS_00018809 lncRNA downstream 59445 2590381 ~ 2596121 (-) True XLOC_008931
TCONS_00017644 lncRNA downstream 135963 2517783 ~ 2519603 (-) True XLOC_008930
TCONS_00019112 lncRNA downstream 327282 2323666 ~ 2328284 (-) True XLOC_008928
TCONS_00019114 lncRNA upstream 156008 2813516 ~ 2816142 (-) True XLOC_008942
TCONS_00017662 lncRNA upstream 260749 2918257 ~ 2931021 (-) True XLOC_008946
TCONS_00019115 lncRNA upstream 457829 3115337 ~ 3116262 (-) True XLOC_008951
TCONS_00019116 lncRNA upstream 502930 3160438 ~ 3162459 (-) True XLOC_008952
TCONS_00019117 lncRNA upstream 1097058 3754566 ~ 3760957 (-) True XLOC_008957
TCONS_00017650 mRNA downstream 2926 2650787 ~ 2652640 (-) True XLOC_008936
TCONS_00017649 mRNA downstream 14600 2638884 ~ 2640966 (-) True XLOC_008935
TCONS_00017648 mRNA downstream 22675 2631421 ~ 2632891 (-) True XLOC_008934
TCONS_00017645 mRNA downstream 59441 2589949 ~ 2596125 (-) False XLOC_008931
TCONS_00017643 mRNA downstream 135926 2510761 ~ 2519640 (-) False XLOC_008930
TCONS_00017652 mRNA upstream 43138 2700646 ~ 2726662 (-) True XLOC_008938
TCONS_00017653 mRNA upstream 70162 2727670 ~ 2754056 (-) False XLOC_008939
TCONS_00017654 mRNA upstream 70433 2727941 ~ 2734560 (-) True XLOC_008939
TCONS_00017656 mRNA upstream 118998 2776506 ~ 2803313 (-) True XLOC_008941
TCONS_00017658 mRNA upstream 163260 2820768 ~ 2841677 (-) False XLOC_008943
TCONS_00017647 other downstream 29903 2625028 ~ 2625663 (-) True XLOC_008933
TCONS_00017639 other downstream 389483 2265969 ~ 2266083 (-) True XLOC_008927
TCONS_00017627 other downstream 817683 1834971 ~ 1837883 (-) True XLOC_008922
TCONS_00017597 other downstream 1333660 1321790 ~ 1321906 (-) True XLOC_008910
TCONS_00017537 other downstream 2229810 425695 ~ 425756 (-) True XLOC_008873
TCONS_00017655 other upstream 78875 2736383 ~ 2736498 (-) True XLOC_008940
TCONS_00017689 other upstream 1446900 4104408 ~ 4104526 (-) True XLOC_008968
TCONS_00017694 other upstream 1707650 4365158 ~ 4365272 (-) True XLOC_008973
TCONS_00017700 other upstream 1768986 4426494 ~ 4482147 (-) False XLOC_008974
TCONS_00017702 other upstream 1777957 4435465 ~ 4482230 (-) False XLOC_008974

Expression Profile

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