RNA id: TCONS_00017653


Basic Information

Item Value
RNA id TCONS_00017653
length 4831
RNA type mRNA
GC content 0.41
exon number 13
gene id XLOC_008939
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 2727670 ~ 2754056 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGACTGTTCTAGACGTACCTTCCCGTAAGTGTTTGCGACAGCTCTTCGCGCGCACGCGGCAGCATGACGGAACACGGCAGCGAGAAGATGGCGGAAGAAGAGCGGAATGCCAGTGCAGAGAAACTCAAGGAGAAGGCTAATGACTACTTTAAAGATAAAGACTATGAGAACGCCATCAAGTATTACACAGAAGCACTGGATCTCAACCCAACCAATCCCATATACTACAGTAACCGGAGTCTGTCGTATCTGCGCACCGAGTGCTATGGCTATGCGCTGGCCGATGCCACCCGAGCCCTGGAGCTGGACAAGAACTACCTTAAGGGCTACTATCGGCGAGCCACCTCCAACATGGCCCTGGGGAAGTTTAAAGCAGCACTCAAAGATTATGAAACGGTGGTTAGAGTTCGGCCCAATGACAAAGATGCCAAGATGAAGTACCAGGAATGTAATAAGATTGTCAAGCAGAAGGCCTTTGAACGGGCCATCGCCAGCGACGAGCTCAAACGATCAGTAGTCGACTCCTTAGACATCGAGAACATGACAATTGAGGACGACTATGCGGGACCTAAACTTGAAGATGGGAAGGTTACGCTGAAGTTCATGGAAGACTTGATGGATTGGTTCAAAGACCAAAAGAAACTGCACAGAAAGTGTGCTTACCAGatACTGGTTCAAGTTAAAGAAGTTTTAACCAAACTTCCTAGTCTTGTTGAGATTACATTAAAAGAGTCAGAGAAAATCACTATTTGTGGCGATACACATGGCCAGTACTATGATCTTCTAAATATTTTTGAGCTGAACAGCTTACCATCTCCAACTAATCCCTATCTGTTCAACGGAGACTTTGTGGACCGCGGATCTTTTTCTGTCGAGGTCATTCTTACGCTTTTTGGCTTCAAGCTGCTCTATCCAGAACACTTCCACCTGCTAAGAGGTAACCATGAAACTGATAACATGAACCAGATGTATGGCTTCGAGGGTGAGGTAAAAGCGAAGTACTCCTCCCAGATGTTCAAGCTGTTCAGTGAAGTCTTCCAGTGGCTTCCTCTTGCGCAGTGCATCAATGACAAAGTACTGGTGATGCACGGTGGACTGTTTAGTGAGGACGGTGTGACCTTAGATGACATTAGAAAGATAGACAGGAACAGGCAGCCGCCAGATTCTGGTCCGATGTGTGATCTCCTGTGGTCAGATCCTCAGCTGCAGAACGGACGCTCCATCAGTAAGCGCGGCGTGAGCTGTCAGTTCGGGCCCGACGTTACAGAGCGATTCTTGGAGCAGAACAAACTGGAGTACATCGTGCGCAGCCATGAGGTCAAAGCCGAAGGCTACGAGGTCACTCACTCAGGGAAGTGCATAACCGTGTTTTCAGCGCCAAATTACTGTGACCAGATGGGGAATAAAGGAGCGTACATTCATCTCAGGGGATCAGACCTCAAGCCAGAGTTTCACCAGTTTACTGCTGTGCCTCATCCAAATGTCAAACCGATGGCATACGCCAACTCCCTGATGCAGATGGGTATGATGTAGAGGTTTTCTCACACAGAAGCTGCTGTGGTCTGAAGTCCACGCCAATCCCTCCAAATCCATCCTCACTTTCTTCTTATCGCcgtttcaaacaaaaaaaaaggtttcttcCTTGCGCACAAACATTTAAACAGTTCCTATATCATCATCCTTATTAGTGCATCGTTTGAGTAGTAAACTTATGATGCCTTTGCAAAAAATGTCTCGTTTCTactccaaatatcttaaaattcctaaatcaaggaGCATTTTCTAGACTAATAAACAATATAGGCATGCTTTCAGAGATAATACATCAAAAGTAAGTGTTTTATCCTTAAAACAGGCTAAATCTGCCAATGTGTAACTTAAAtgatcttgtttttgctttgaaataagaaTATTGTGCTTGCTTTAAGGAGCAAATGTGTGCATACTATTTCTGAAAACGAGACCATATgtattgcttgtctagaaaatgcttctcagtgtaagagtttttagatatttggactagaaacgagacacaAACTCTAATTTGAAGAAGAAATGGGAATGTTATTTGTGCATTAAAccgatagttcatccaaaaatgaacagTTCCTGTTATTTTACTCGCCCACAGATCATCTTAGATGACTGTTTTGTCTTCAGGAGAACTTTAAAGGAGGTTTTGAGCTGAATGTGACGGTGATtgatataatggcagtgaatggtgaccggtttattacattaaaaatgaaCATATAAATGAGTACAAATCAATAGTCGTGGCTCCTCATGAGGTCTAATAAAGCCGAACGATCGCTCAGTGTGAGAAACTAAACattgtttacaatattattagctttaatccacatCCTGGTCAAACAGTTCTCGGCGCATGTGTGAATGCAGTCCGATTGTATTCCTGAGAATTCATCataatactgtataataatgtttaatttcttaTACTGGGTGATCGTTTGGCCTCACAAGACCTCATTGTGTCTTCATGAGCCACGGTTATTGATTTGTACCcatttatgtgtgtttatttttaatctacactgcaaaaaatgcttttcttacttagattttttgttttgtttctagtccaaatatttaaaaattcttatatcaagaaacattttctaggcaagcaaaatatattgtcttgttttcagcaataatatCCCAATATTAAGGcagtttttccttgaaacaagcaaaataatctgccaatgggataagcaaatgaatcttgtttttccttttgacataagatttgTTTGCTttcctcattggcagattatttagcttgttttaaggaaaaactcacctaattttggcatattatatcttaaaacaaggcAGTATGTTTTGCATGTCTAAAAAATTcgtcttgatttaagagtttttagatatttggactagaaacaagacaaaaaatctaagtaagaaaagcattttttgcagtgtagtaaaCCGGTCACCATTCACCGCCATTATATCAGTCACCAAAGACCACGGATTCAGCTTAGAATCTTTAATGTTCAATGAAGAAAGTCACCTACATCTCGGATGAGCTTTGgaagttttgggtgagctatctcttaaatcaggggtgtccaaactctggtgtcctgcaaggatgtttctacactctcagaaataaaggtacacgagctgtcactggggtggtaccttttcaaaaggtacaaatctgtacctaaaatgtccatattaatacctcaagggtacatattagtacctaaaagggtactaatatatactttaggtactaatatatacttttgaggtaccaatatggaccctttaagtacaaatgtgcagTGACGGCTCGCGTACCTTTGTTTTTGAGAGTGTAGAaagcctggtaagagcttgattagctagcccaggtgtgtctgattagggttggaactatactttgcaggacaccggccctccaggactgagtttggacacccctgccttgaATAGATGTCATCCTTGGGTTGATACCCCCTCCTTGGTCATTAGGTGTTCATGTGAAGCTACACAGTTTGAATCGGatgataataaaactaaattgtaccaaagaacaacaaatatatatgtgtAGCGTCACAAAATAAGAGCGCTCATGTAGAATTACAGCTCCTGCGACCATGCGGATCAAAACCCTGATCAACACTTTACAAAATCTGTGTTTCTACATGAACCTTTCGTTTGCCCCGTGAATACATCGCAGGACCGTTTCCTTTACATTTAGTGAAGTGTTGGGAGGGAGAACGGTCATTAATACTGTAGTAGTATAGATATTAACGTGTCATCTGTTCACATGAGGAAAAGAAAAGCAACGTATAATAAAGAAACTCCACGCACAGCATCTGTCTTGCAGGCTAGGGTTTCTGTTTGTCCAACCTACATGATAAATGTCACAAAACAAATTGAGCTGCTGTGTAAAACTTCCACGGTTTTCCTTCACACACTCGCTCCCTTTTAAGAAGGATAGAACAGTGTGATATTATTAAGCTCGGTCTCTTGTCTCCACTATGTAGGCAGCTCCCACGGTTATTCGTTTTTCTCCCAACATGCTTAACTGAAGTGCACTGGAGATTCTCTATATCAGTGTTTCTcgaccatgttcctggaggaccaccacaTTCTCCTTGTCTCCTCAACCGAACacgcctgattcagatcatcagctcgttagcagagactgaaagacctgggTGTGACGAACACACACACGAACATGCAGTGCTGGCGATCCTTcgtggaacgtggttgagaaacactgctctatatccattttttttatttccgttTAGCAGATCtccctttttgtgtgtgtgtatgtgtgtggactTCCAGCAGAATCCTACCTTACTGTCTCTTTAAACGCACAGCAGTCATGACCCCACGCCCCTTGACTTTTTAGAGGATATCAGTATGTACACcaacatgtatgtatatatactttATCATTTGAAACTTCTGTGTACATGTTTGGAAAAGACAAgatattgaataataaaacaaatatgccaGTCTGATGATTAGCTTGTGcttgtgcagtttttgttgtgaatgatgtttgctgtttatgTTTGTTAAGCTGCGCTAGTAGTAAGACTGGGCGATTTGGCCTGAAATCAAAGAATCGAGAAATTAATTGaacattaattgattaattgaagattaatattatggggtattgtgtgtagaatgctGAGGAAATAGCTacatttattttggaataaggctgtaacatagaaaatgtggaaaaggttCAATGCAAAAcactgtttttgtcttgtttccagtc

Function

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component
GO:0016787 hydrolase activity molecular_function
GO:0004721 phosphoprotein phosphatase activity molecular_function
GO:0004722 protein serine/threonine phosphatase activity molecular_function

KEGG:

id description
ko04010 MAPK signaling pathway
ko01009 Protein phosphatases and associated proteins

ZFIN:

id description
ZDB-GENE-050327-75 Predicted to enable protein serine/threonine phosphatase activity. Predicted to act upstream of or within protein dephosphorylation. Predicted to be active in cytosol and nucleus. Orthologous to human PPP5C (protein phosphatase 5 catalytic subunit).

Ensembl:

ensembl_id ENSDART00000129380

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019113 lncRNA downstream 101742 2618279 ~ 2625928 (-) False XLOC_008933
TCONS_00017646 lncRNA downstream 116500 2598804 ~ 2611170 (-) True XLOC_008932
TCONS_00018809 lncRNA downstream 131549 2590381 ~ 2596121 (-) True XLOC_008931
TCONS_00017644 lncRNA downstream 208067 2517783 ~ 2519603 (-) True XLOC_008930
TCONS_00019112 lncRNA downstream 399386 2323666 ~ 2328284 (-) True XLOC_008928
TCONS_00019114 lncRNA upstream 59460 2813516 ~ 2816142 (-) True XLOC_008942
TCONS_00017662 lncRNA upstream 164201 2918257 ~ 2931021 (-) True XLOC_008946
TCONS_00019115 lncRNA upstream 361281 3115337 ~ 3116262 (-) True XLOC_008951
TCONS_00019116 lncRNA upstream 406382 3160438 ~ 3162459 (-) True XLOC_008952
TCONS_00019117 lncRNA upstream 1000510 3754566 ~ 3760957 (-) True XLOC_008957
TCONS_00017652 mRNA downstream 1008 2700646 ~ 2726662 (-) True XLOC_008938
TCONS_00017651 mRNA downstream 70162 2655566 ~ 2657508 (-) True XLOC_008937
TCONS_00017650 mRNA downstream 75030 2650787 ~ 2652640 (-) True XLOC_008936
TCONS_00017649 mRNA downstream 86704 2638884 ~ 2640966 (-) True XLOC_008935
TCONS_00017648 mRNA downstream 94779 2631421 ~ 2632891 (-) True XLOC_008934
TCONS_00017656 mRNA upstream 22450 2776506 ~ 2803313 (-) True XLOC_008941
TCONS_00017658 mRNA upstream 66712 2820768 ~ 2841677 (-) False XLOC_008943
TCONS_00017657 mRNA upstream 66712 2820768 ~ 2841677 (-) True XLOC_008943
TCONS_00017659 mRNA upstream 96909 2850965 ~ 2856362 (-) False XLOC_008944
TCONS_00017660 mRNA upstream 96909 2850965 ~ 2857961 (-) True XLOC_008944
TCONS_00017647 other downstream 102007 2625028 ~ 2625663 (-) True XLOC_008933
TCONS_00017639 other downstream 461587 2265969 ~ 2266083 (-) True XLOC_008927
TCONS_00017627 other downstream 889787 1834971 ~ 1837883 (-) True XLOC_008922
TCONS_00017597 other downstream 1405764 1321790 ~ 1321906 (-) True XLOC_008910
TCONS_00017537 other downstream 2301914 425695 ~ 425756 (-) True XLOC_008873
TCONS_00017689 other upstream 1350352 4104408 ~ 4104526 (-) True XLOC_008968
TCONS_00017694 other upstream 1611102 4365158 ~ 4365272 (-) True XLOC_008973
TCONS_00017700 other upstream 1672438 4426494 ~ 4482147 (-) False XLOC_008974
TCONS_00017702 other upstream 1681409 4435465 ~ 4482230 (-) False XLOC_008974
TCONS_00017735 other upstream 2629006 5383062 ~ 5383180 (-) True XLOC_008997

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000091_00277114_00290224.mRNA True 698 mRNA 0.47 5 CI01000091 277114 ~ 290224 (+)
bowfin (Amia calva) AMCG00013525 True 4624 mRNA 0.44 13 CM030125.1 33647849 ~ 33661773 (+)