RNA id: TCONS_00017658


Basic Information

Item Value
RNA id TCONS_00017658
length 2877
RNA type mRNA
GC content 0.48
exon number 10
gene id XLOC_008943
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 2820768 ~ 2841677 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGCACGGTTCTGAGGAGAGTGTGCCTGGAACCGTGCTTCAGAGGCTTATGCAAGAACATCTGCGATACACAACGAGTGGAAATGGTGGAGGGGTAGAAAACATTTCTCAGGTGCCAAGCAGCCCCACATCCACAGAGAACCCATTCCTGCAAAAAGAGGGTCAAGTAGCATATTCATATCAGCTTTTGCCCTTACACTTTCAGTCGCGACAGGAACCACAAGGTCAGGAGCATCAAGTAGACAGCAGTACCATGGAAAAGACTGTTGGTGTTGGTGCATGTAGAGCAGACCAAGCTTTGCCTGAGATCGACCTGTTGGAGCCTCCATCCTATGTGGAGGCTAAAATCCAATCTCAACAGATTAAAGGACAGCAAAGTCTGATGGATCCTCTGTGTCAAACCCACAACTACCAGAGTCTTCAAGATCGAGAAAACCTTTCAAATAATCCACAACAAACTCCAAATCTGGTCTTTTATAAGGAAACCCCTAAAAACCTTGTCCACCAAAGTCAGCAGCAACACAACCAGCCTTCGGCGATGTCTGAAAGTCCGACAGGCTCACATTCCCATCTGCCATCACTTTCTAACCCGTGTTCAATCTCCTCCCCTGCTCCACTTTCATCCTCATCCACGTCTCTCTCAACGGTTCCCACGAAGAACCTCGTGGAAGGTCAAACATGGGTTCAACAAGGATTCAATGATGATGCATCTCTCTGGGAGGAAGGTGTGTTAGATTTGAACCAGGGTCACGTTCACTCACCGAGCGAAAGAATCATGCAACTCAGGCTAGAATACAGTGGTGCTAAGCAAAGCATCGGACCTTTCAGTTCACCTTGCACAGGAGACACTGTTCATTTTGGGGCTGATAATACAGCAGATTCCCTTTCGTCAGCTAGTAAGACCTCAAATAGTAACCAACAACTTCCACCGCCACCCTCGTCACTGTGGACTCTGGATCAAAGAGGTCCTCCCCCAGAATATCCCTTCAAGTTTAAGTTACAGACTGCGCTTTCGCCCATGTTACACTCAAACTCTTCATCTCCGGAACAGGCACAAATCTTCAGTGATACTTTGACAGCAGCCGTGATGGAGACAGCACCACAGAGAGGAATAGAAAGACACAATCCTTCAACTTCACATCTCCAGACACAGACCGGCCCCGTGACCTCACAGGCTTCTCAGCAAAATTATCAGGCTGTATCTCTGTCTCAGTCACTGGCATTTCCTCCACCTCAGACTGGATTCGTGACTCAAGGACTGTCGACTTGTGTGGCCCCTTTTAGGCAGCCTTTCCAAGGGGAAACGTTTGCTATTGTCAGCCATGCCAAGCCGATCCTGGAGAGCTTGAAAGAAGAGAACCAAAACCTTAAACTAGAACTTCACAAGCAAAACGAGAAGGCCAGCAAACTACAGCAGTTGGAGATCGAGGTTGCACGACTGTCCGAGGCACATGAGAGTTTAGTCAAGAGCTCATCCAAACGCGAGTGTTTGGAAAAAAACATGAGGAACAAACTGGAGGCGGAGATCAGGCGTCTTCATGATTTTAACAGAGACTTAAGAGGAAGAGAAAGCCAGAAAGACCTAGAAACATTACAGATAGAGGCAGCGAATCTCCGAACAATGAATGAAGATCAGAGACGGCACATTGAGATCTTAGAGCAAGCTTTGAATAATGCTCAGAGTAAAGTCATCAAGCTGGAGGAAGAGTTGAGTAAAAAGCAGAAGTATGTGGAGCGGGTAGAACGGTTGCAGCAGGCACTAGCACAGCTCCAGGTCGCATGTGAAAAACGCGAACAGCTCGAACAACGTCTACGTATTCGCCTGGAACGAGAAGTGGATTCACTGCGAACACAACAGCGTGCTGGTATATCGGTTTCCCGCACCGCAGGTGAGTCCACAGCTCCTGCTGTACTGGATTTGCTAAGGGAGAGAGAAGAAAGGATTCTGGGATTGGAGGCTGATATGACACGTTGGGAGCAAAAGTACTTAGAAGAAAGCGCAATGAGACACTTTGCCATGGAAGCCGCAGCGACAGCCGCAGCACAGAGaGATACAACTATAATCCAGCATTCTCGCAGTGGCAGTTACAGTGACAGCTCTCTGTGGCTGCATGAGGAGGAGAACAGAATTCACAGCGCTCGTCAATCTCAGGAAATGGAGCAAAGGATAAAGGACTTGCATGCTCAGTTGCTGGAGAAAGATGCCATGATTAAAGTCCTACAACAGCGTTCTCGTCGAGATCCTGCTCCTCTGCGTCCTGCCCGTTCTGTGCCCTCCATTTCTGCAGCGACTGGACTGCATGCACGGCAGAAGTCTCAGACTGATCCCAGAGACACGCACAGTTGGAAAGGCAGTACAAATGTACTCCTGAGAAAAAGTCAAGTAGACCACATCCTTCCCTCTTTGCCCCCTCTTTCAGATTCTGTCTCTTCATCTCTCCCTGCCCCCTCACTTTCCTTTCTTCCTCCATCTTTCTCCTCCTCTCTACCTTCCTCTTTTCCTCCCTTCTCGTCCTCTGCATGTTCGAACGCGTCATTATTATCCTTACCCAACTGTGTTCCCAACTCCAGCGCTTCCCGTCTTCCTACCTCTGCCTCTTCCACATTACTGTCGTCTTCATCTATTTCTCTTCTGCCTCCTTTATCACTCTCTCTGCCCTCCACTCCTCTTCTATCTGCTCATTCCAAATCAGCCAGCAAAGACAGTAGCAGTCAAACAGGACAAAGTATGAAGACATCAAGTACTGCTAGCTCCACAGCACAAAAAAAGAGAGAATCTCCATCCAGCCAATCTAAAGGCCTGGAGGGTCGAGCACAGCTGACTGCAGGACAGAAGATGCCCTTGCTTGATCTAGATCTTGTGGAGATCCTTATCTGA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000180290

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019114 lncRNA downstream 4626 2813516 ~ 2816142 (-) True XLOC_008942
TCONS_00019113 lncRNA downstream 194840 2618279 ~ 2625928 (-) False XLOC_008933
TCONS_00017646 lncRNA downstream 209598 2598804 ~ 2611170 (-) True XLOC_008932
TCONS_00018809 lncRNA downstream 224647 2590381 ~ 2596121 (-) True XLOC_008931
TCONS_00017644 lncRNA downstream 301165 2517783 ~ 2519603 (-) True XLOC_008930
TCONS_00017662 lncRNA upstream 76580 2918257 ~ 2931021 (-) True XLOC_008946
TCONS_00019115 lncRNA upstream 273660 3115337 ~ 3116262 (-) True XLOC_008951
TCONS_00019116 lncRNA upstream 318761 3160438 ~ 3162459 (-) True XLOC_008952
TCONS_00019117 lncRNA upstream 912889 3754566 ~ 3760957 (-) True XLOC_008957
TCONS_00019118 lncRNA upstream 1321901 4163578 ~ 4174873 (-) True XLOC_008970
TCONS_00017656 mRNA downstream 17455 2776506 ~ 2803313 (-) True XLOC_008941
TCONS_00017653 mRNA downstream 66712 2727670 ~ 2754056 (-) False XLOC_008939
TCONS_00017654 mRNA downstream 86208 2727941 ~ 2734560 (-) True XLOC_008939
TCONS_00017652 mRNA downstream 94106 2700646 ~ 2726662 (-) True XLOC_008938
TCONS_00017651 mRNA downstream 163260 2655566 ~ 2657508 (-) True XLOC_008937
TCONS_00017659 mRNA upstream 9288 2850965 ~ 2856362 (-) False XLOC_008944
TCONS_00017660 mRNA upstream 9288 2850965 ~ 2857961 (-) True XLOC_008944
TCONS_00017661 mRNA upstream 43034 2884711 ~ 2903475 (-) True XLOC_008945
TCONS_00017663 mRNA upstream 90205 2931882 ~ 2973368 (-) False XLOC_008947
TCONS_00017664 mRNA upstream 91870 2933547 ~ 2954443 (-) True XLOC_008947
TCONS_00017655 other downstream 84270 2736383 ~ 2736498 (-) True XLOC_008940
TCONS_00017647 other downstream 195105 2625028 ~ 2625663 (-) True XLOC_008933
TCONS_00017639 other downstream 554685 2265969 ~ 2266083 (-) True XLOC_008927
TCONS_00017627 other downstream 982885 1834971 ~ 1837883 (-) True XLOC_008922
TCONS_00017597 other downstream 1498862 1321790 ~ 1321906 (-) True XLOC_008910
TCONS_00017689 other upstream 1262731 4104408 ~ 4104526 (-) True XLOC_008968
TCONS_00017694 other upstream 1523481 4365158 ~ 4365272 (-) True XLOC_008973
TCONS_00017700 other upstream 1584817 4426494 ~ 4482147 (-) False XLOC_008974
TCONS_00017702 other upstream 1593788 4435465 ~ 4482230 (-) False XLOC_008974
TCONS_00017735 other upstream 2541385 5383062 ~ 5383180 (-) True XLOC_008997

Expression Profile

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