RNA id: TCONS_00017660


Basic Information

Item Value
RNA id TCONS_00017660
length 2409
RNA type mRNA
GC content 0.40
exon number 3
gene id XLOC_008944
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 2850965 ~ 2857961 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTAATTTCTGAGATGCCATAAGAGTAAATTAATACatgtaaaattaataaaagttcATACTTACACGGTGCTTCCAGCTGATGCCATACTAGGAGACTGCAGATACTAAAAACGGTCGTGCTGAtgttgtagaaaaaaataaagtacaaatctGTTGATGAGATCTAAAGTTTTAGCCAGTTAATACTACATACATATCGTCAGTAGGTAACATGCATGCTGAACATACAGAACAGCAAGGTTAATAacatatattgattaaaatacacttaattcTACATATTTGTAAGCTGAATTATgctaacaataaaaagaaaagcatAATACCTATGAAAAGCAAGAAAGCTCCTTAGACTGACACAGGAGTTCACATGTACACAATCTCCGCCCACTGTCGGAAGTCGCGGGAAGGTTTGTTTCCTTAGAATTCTGGGAAATGTATTTTATGAAAGCGAACTGACTGCGCAATTGATTGCGCAAAAAACTACACTTCCCAGCGTCACTTGCACATTTTGTGAGTTCAACGTGAAGACGGTTGGTCATTGCTGTTTTCTTGATGGATTTCCCAGAAGATTTCAACCAGCTAGAGCTGCTGGATCCTCATGTGATTCCCATGGGGACGAGGAGCAATTGGGCAGAAGAGGAAGAAGGAGAGGAAGAGGATGAAGCCATGCACACAGAGGAATGGCATCAACAACAGGAACTTCATTTACAGGACACTCCCTCTGAACTGATGTTATGGGCTGCCGAGAGGAACAGATGTGCAACGGTTGAGCGTCTCATTGCATTGGACCCGACGCTAGTCAATTGTCATGATAGCGACGGCTACACCCCTCTGCACCGCGCTGCCTACAGTGGCCATCACGACGTGGCGTCCGCTCTTTTAAAAGCCGGAGCGAATCTCCACGCGAGAACAGCCGACGATTGGATGCCGCTACATAGCGCCTGTCGCTGGGGTCACGCTAACGTAGCGTCTCTTCTTTTGCAGTGGGGGTCAGAAGTCAATGCGATGACAGCAGGTCGACTCACACCACTACAGCTGGCTGCTGGAAATGCCGCCGCAGGCAAAACCATTGAGCTTTTGCTATCACAGCGCACCCTAGAGGCGGGACTGAAAAACAGCGCAGGAGAGACCGCATATGATATCGCACATCGCACAAGTGAACTTCACAGACTGTTCGAGATCGTAGAGCCGTGTAATAACGTATATTAAGATATTTACGTGTTAGCTTAGCATTAAACTTGGCTTATGGCTTATGACATTGTACGaataaacatgaattattttttttcttttgtaatcgAGATTTGTAGTGACATATATTGATGTATAAACTTTGCTCAAGTCttgcatgtccaaactcggtcctggagggccggtgtcctgcaaagtttagttccaaacccaatcagacacacctgggctagctaatcaagctctgacTAGCCTTTCTAGagacatctttgcaggtgtgttgaggcaagttgaagttaaaatctgcaggacaccagccctccaggacagagtttggacacccctggcttaagtgaacaaaattttatttattttattttttcgctTTCACAGAATCTTGTAATAACAttgacatacagtgctcagctgtATTGGGTACACCCCCTTTTGAACATTAATAtgtttatctatttctcagtgaatctagatgattttttttttgcgcattttAGCATCAACTAATTGGTCATTATTGACAATGGAATGTTATCAACGTATGCCGTCATCAATTCGTTGGGAAGTTCACGGAAGATATGCGCAATGAAGCATACAGAACTAGTGTTGTGTCGAATTCAGCTTTCCCTATGTTTCCCCTCAGTTTATATTTCCACTACGCAAACTGTATTCTGTACAGAGCTGGTGTCAATCACTCTCTTGAGATcgtgccacagcatctcaatcaGGTTGAGGTCAGGATTCTGACTGGGCCACTCCACAAGCTGTATTTTCTTCTATTGAAGCCATTTTGTTGTTCATTTACTTCTTTGCGTTTGGGTCTTTGCATCACCCATCCTTTGCGTTTGGATAAAATTAGTTGAACAAATAATTTAGATACGTCGAAAGTAATCAAATtagttgtattttaataaaattctaTTGCAATTGATCATGCGAAAAGTTGATCGAACACATGAATCATCCAAACCCTGAATGCTGTTTTGAACAGAATAAAAACTCATTAAAGACTTTTTACccttgaaattaatttaaaaatgcattaataaagcTGCATCTTGCGAAAAACAAGAATTATTTGTCTCATTTGAGATGTTTAAATTGGATGTGCATCACGAAAGACCATCTTAACTCATCAGATTTATtgatattgctatatatatatatatatatatatatatatatatatatatatata

Function

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-050417-46 Predicted to be involved in positive regulation of transcription, DNA-templated. Predicted to be active in cytosol. Orthologous to human ANKRD49 (ankyrin repeat domain 49).

Ensembl:

ensembl_id ENSDART00000033263

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019114 lncRNA downstream 34823 2813516 ~ 2816142 (-) True XLOC_008942
TCONS_00019113 lncRNA downstream 225037 2618279 ~ 2625928 (-) False XLOC_008933
TCONS_00017646 lncRNA downstream 239795 2598804 ~ 2611170 (-) True XLOC_008932
TCONS_00018809 lncRNA downstream 254844 2590381 ~ 2596121 (-) True XLOC_008931
TCONS_00017644 lncRNA downstream 331362 2517783 ~ 2519603 (-) True XLOC_008930
TCONS_00017662 lncRNA upstream 60296 2918257 ~ 2931021 (-) True XLOC_008946
TCONS_00019115 lncRNA upstream 257376 3115337 ~ 3116262 (-) True XLOC_008951
TCONS_00019116 lncRNA upstream 302477 3160438 ~ 3162459 (-) True XLOC_008952
TCONS_00019117 lncRNA upstream 896605 3754566 ~ 3760957 (-) True XLOC_008957
TCONS_00019118 lncRNA upstream 1305617 4163578 ~ 4174873 (-) True XLOC_008970
TCONS_00017658 mRNA downstream 9288 2820768 ~ 2841677 (-) False XLOC_008943
TCONS_00017657 mRNA downstream 9288 2820768 ~ 2841677 (-) True XLOC_008943
TCONS_00017656 mRNA downstream 47652 2776506 ~ 2803313 (-) True XLOC_008941
TCONS_00017653 mRNA downstream 96909 2727670 ~ 2754056 (-) False XLOC_008939
TCONS_00017661 mRNA upstream 26750 2884711 ~ 2903475 (-) True XLOC_008945
TCONS_00017663 mRNA upstream 73921 2931882 ~ 2973368 (-) False XLOC_008947
TCONS_00017664 mRNA upstream 75586 2933547 ~ 2954443 (-) True XLOC_008947
TCONS_00017665 mRNA upstream 118159 2976120 ~ 2985599 (-) True XLOC_008948
TCONS_00017666 mRNA upstream 129632 2987593 ~ 3078600 (-) True XLOC_008949
TCONS_00017655 other downstream 114467 2736383 ~ 2736498 (-) True XLOC_008940
TCONS_00017647 other downstream 225302 2625028 ~ 2625663 (-) True XLOC_008933
TCONS_00017639 other downstream 584882 2265969 ~ 2266083 (-) True XLOC_008927
TCONS_00017627 other downstream 1013082 1834971 ~ 1837883 (-) True XLOC_008922
TCONS_00017597 other downstream 1529059 1321790 ~ 1321906 (-) True XLOC_008910
TCONS_00017689 other upstream 1246447 4104408 ~ 4104526 (-) True XLOC_008968
TCONS_00017694 other upstream 1507197 4365158 ~ 4365272 (-) True XLOC_008973
TCONS_00017700 other upstream 1568533 4426494 ~ 4482147 (-) False XLOC_008974
TCONS_00017702 other upstream 1577504 4435465 ~ 4482230 (-) False XLOC_008974
TCONS_00017735 other upstream 2525101 5383062 ~ 5383180 (-) True XLOC_008997

Expression Profile

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