RNA id: TCONS_00017661


Basic Information

Item Value
RNA id TCONS_00017661
length 5369
RNA type mRNA
GC content 0.42
exon number 4
gene id XLOC_008945
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 2884711 ~ 2903475 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGGCGCCCACGCATCCAACCTGGATGAGGTCTTGGCTGAGGACATGCACTACTGGTACAACAAGTTCATGAGGGAATCTCCGTCAGGCTTGATTACGCTGTTCGAGCTCAAAAACATGCTGGAGATGCAGGGCATGACGGAGGAGGCCAGCAGCTACGTGGACCAGGTCTTCTTCACGTTTGACATGGACGGGGACGGCTATATAGATTTCGTGGAGTACATCGCTGCTGTAAGTCTGCTCCTGAAAGGAGAAATCAACCAGAAGCTGAAGTGGTACTTCAAACTCTTCGACCAGGACGGAAACGGCAAGATCGACAGAGATGAAATGGAGACCATATTCAAGGCCATCCAGGACATCACCCGGAGTTATGAAATCCCTCCAGATGACATCGTGAGCCTGATCTATGAGAGGATTGATGTTAATAACgaagGTGAGCTGACGCTTGAGGAGTTCATCACAGGAGCTAAAGAGCATCCAGACATCATGGAGATGCTCACTAAGATGATGGACCTCACACACGTCCTGGAGATCATCGTCAACGGACAGAAGAAAAAGAAGGAGTGAAGCTGTGGACGGGAACAAGAAGAAgaacaaaaagaagaagaagaagagatgaCCCAGTCTGTAAAGCCCAAAAACAGACTGGACAGTGGATGAAACAAGGTGGACAAGctcaatcatcatcatcatccctcAAACACTTTCTCTTTGCGTGTGTTTGTGCCTCCAGATATCTCGGTTTCCCTTCTACGTTCCACTTCAACAGCTCTGAAAAATGTGCTGAAATGACACAAGTCATGTGGGAGTTTGGGAGCGTGAGCTTACCAACGGACATGTGTAGTGGAAAAACAAGTCGCAGTTTaaagtgtatgaatgtgtttgcATTGGAAGCGCAGTCACACATTTTAAAGGTCTActtaagtgctttgaaatgtgcatttgttTATAAACTTGATTtgtgatgtaatctcaactgaaggGTGGAGAGAGGCTGGGACAGAGTAGCCCcgccccctttaaaaaaacagccaatgacgtttcattttataacagtgggagtggttgagctcaagaaCATCAAATGAACAGATAATGAgcgggcggggcatgtcagacacctGAGAGCATTCGACTGGTCAGGAGATTTGATGAGAAGCTGAAGTATGACATCATAAAAATCCaagatccatttaggcggaagtgacgaACTGCAAACTTTGGGTGTTTATATCccctaaatgtgaattttgttactgtttgggagcacactagcttataaatatccatactgatgctaacatctaaaacttttatgttcatttcatgggacttttaatggaaataaaaatcTCTAGAAATAGTAAAGCAATAGCTATACTGAAAGTACTTTCTGGTCGTTGGATCTGATTAAAAAGTTAACTCCTCGTGAAGTTAGCTTCTCAAATCTAAGTTTACCGACTGGTAAACCATTCGTACAAGTCATGAGTTTGATTGTATCATCCAGATACTGTGTATAAAGGGGTCGGTATTATAAATTGtacagtttttgttgttgttgttttgttatacTGTGTGTACTGTAATCTTCATTCTGAATCGACAACTCTAAAGTTCCTACTTTgccttatataaataaatgcaatgtactgCTTCTTTGGACTGCAGTTTCCTGTCTTCACTGTTACTATGGCTTTTCCTTTTAGgattaaataaaccaaaatgtGTGTATCACACCGGGTgctgctcctgtcagctaagaacaggaaactgaggctacaattcacacaggctcaccaaaactggacaatagaagattggagaaacgttgcctgatctgTTAAGTCtagatttctgctgccacattcagatggtcgggtcaaaatttggcatcaacaacatgaaagcatggatccatcctgctttgtataagcagttcaggctggttgtggtgtaatggtatgggggatgttttcttggcacactttgggtccattagtaccaactaagtattgttgctgaccatgtccattcctttatgagcAGTGTCTCATCTTGTGtctgctacttccagcaggataacgcaccacgtcataaagcgcgaatcatctcagactgttttctaGAACATGACAAggtcatgacaatgagttcactgtattcaaatggcctccacagtcagcagatctcaatccaactgagcacctttgggatgtggtggaatgagagattcacatcatggatgtgcagcaactgcgtgatgctatcatgtcaatatggagcaaaatctctgaggaatatttccagtgccttgttgaatctctgccatgaaggataaAGGCagctctaaaggcaaaagggggtccaacccagcactagtgaggtgtacctaataaagtggccggtgagtgttaaTATTGCAGTACTgtgcaataaaaatacatttgttgagaaacaaacacacatgcagtatTTTGCTATCACATAACACATAACActtcataaatcaaactttcataCACATACCTTTCCATAAATTGCCACCTGCAATGTTCTATGAATAAACACATGAGAAGAAAAGTGACAGGTTCATCGCTTTTATGACTTAAAAACAGACATGAACAGTAATAATGATCAAATAAATcctaaaaaaatagtttaaaagacATCAGTTTTCAATGTACATCACTCAACAATGACTTTAAAGCAACTTTAGGGATTTGAACCTTGAACCTACTCAAATCGCTGCAAAGATTCTTGTAGactaaaaggaaaaagaaaaatcgGTTTTATTAAATTTTCATTAAGAAAAAGTAGATAAGCAGCTGGAAGTCCGTCCTCATCTGCGCTGTTTTCTTGAGCCCTTGAATGGATCAAACTCATCCTGAGAGAAGAACAGAAGGCAAAGATCAACTTGGGAACAATTACAATACATTTAGTAGTGATGCACACAATTTTCAGCCACCAAAAATGATCGGTTTCGTGATAATTTTACtggcttatgtgtgtgtgtctgtgtgtgtgtgagtgtgtgtgttgtaaagaGTATAAATAAAGTTactgaattaaatttaaaaaatcttataaaATTAGATCATTTAACTTACTAAAGCTAGCTAAGTAACTAAACTAACtaaacaatgttttaattaaatcaatataaattaaataaatatgaattaaattaaatcaatataaattaaattaaagcataTTCAAAATCTTCGGTTTATGCCCAGAATTTTCCTTTTCGTTGCATCCCTACACATCAGGATTGTTTATGAACCTTACCTCACCGCTGTCTTCATCAATGCACACTCCTTTTAAAGACTGGCTCTGGGACGCCCTCTTACTGTCACTTAATGAAGGCAGCCTATTGTGAAATAGATAACAAAAAATTAGGCCTAGCTTGAAGGATTAGGGCTATGGGGAAGGGCTAGttagcccttgaaactgagatttttcaggaccacactcgaaaccaagtaGTAAGACAATTTCCTAGAATACATCATCTACAACGGCAGTACTACTGCACACGGAAGTAATGAGGtgcacaaattagcatttttttgtcattattattaatgtttataacaaacaagcacatgttttaaagggcacctatttgacccctttttaaagatgtaatatgaatattatggttcttctgagtgcgccagtttaggttcagttcaaaacacagttcagattttttattgtgttaaaaGTGTtatgttgggggcgtgtacaaatgttgttgttttaggggcgtgttgcttcacatgaaaattagtttcgaattcccgcccaacttaacaagggggcggagccaagagctcccctgcttcgtgtatggcaacagacaggcagacagagagaagctacatgagtgagaggaccagcattcagctgtacatgtacGACCTGGACTgtgacacagaccaagcagagagtactaTTAAGGTATCAATATTCCTAATGTTTCCGAATGTGTCAGACTTAtggttacaaaatcatttgtgtctttgtatagttttacagccgctGTGTAAAGATGTATGTGTCATCTGTACAGGGATGTaatgattaaccggtttcactaacAACATTTAaattcgtcacggttaattaatcgtgaAGGCTTCTCAAAACTGTGTTTCTGAACGGAACAAAACTgcggcaactaaacaaagttgtGCCAACTGTgagctagtttaaagttccgagcttgtacaccgagactaataaccacgcacactggattaactttgactgaggctataaccacggcaagttcgttatttccaatggagagatgCGCACGTGAGGCAACGCGCTCGCACTTTCCAGCCGCACCTAATTGAGATGATAGGGAGCTTCAGTGGctgcgggaaatgcaaacggctgatgTTTAAgaaagacgcaatgaaaagtccacagatttgcaaacccacctaaagttacaaattaaTGCCGCCGATgggagcgatcatgtggtgaatgttgatccgccagccaAGATCAATCCAGTGTTTTCGGACAGAGTGCTGAAGACTCGGTAGATCAGCTGTTTTCAATGCCCCGAATCTCGATACaatgcattcactgcgtgttcagtgcAATTGgacgctaaatgtaaaatctctgtAGCTCATTCACAGGAAGACGATAAAGGCTCTTGTGTTGAGCCTAataaggatgctttcacacttggttcatttgcctggaccgtacccaagttcgattgtctccccctgccacctccttggttggtttgtgttcacactgtctattttccttctgaaccccggtacgctcgagctgctgttttgtttacggccgttgctaggtgacggccacgcaagcaagcgccgaaatggaaagactcccgcacatcgcggtcattctgcttttactgaaagcttttggacatacagaaagcgacttgcgttcatctgccgcaaaaatattacgcacattcagaacatcacacagtgtctgcaggagctgtttttggaggagacaagcagacatcactgtgtttgccctggctcagtcccgcgcgtgtcaccaaggtacgaaacaagacacacacatgaacaaacgaacgttatgaaaacaatagtttgttgtacagttggcggtttactatagttcacttccgttatttggcacgattgcattcacatctgaAGTGAACCAGTGATACCAGAGTTCGCATAacccgtaccccagaccacctctttcaggcggactcgggtacacTTCACGGGTCCGCACCTGGGTTCAGAAGAcgcattcacactagctaaacgtaccgtactatgacgtcaaacgaactcGTGTGCGGACCAAAAGAGttagtg

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function
GO:0030250 guanylate cyclase activator activity molecular_function
GO:0008048 calcium sensitive guanylate cyclase activator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030829-1 Enables calcium ion binding activity and calcium sensitive guanylate cyclase activator activity. Is expressed in cranial nerve II and eye. Orthologous to human GUCA1C (guanylate cyclase activator 1C).

Ensembl:

ensembl_id ENSDART00000043226

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019114 lncRNA downstream 68569 2813516 ~ 2816142 (-) True XLOC_008942
TCONS_00019113 lncRNA downstream 258783 2618279 ~ 2625928 (-) False XLOC_008933
TCONS_00017646 lncRNA downstream 273541 2598804 ~ 2611170 (-) True XLOC_008932
TCONS_00018809 lncRNA downstream 288590 2590381 ~ 2596121 (-) True XLOC_008931
TCONS_00017644 lncRNA downstream 365108 2517783 ~ 2519603 (-) True XLOC_008930
TCONS_00017662 lncRNA upstream 14782 2918257 ~ 2931021 (-) True XLOC_008946
TCONS_00019115 lncRNA upstream 211862 3115337 ~ 3116262 (-) True XLOC_008951
TCONS_00019116 lncRNA upstream 256963 3160438 ~ 3162459 (-) True XLOC_008952
TCONS_00019117 lncRNA upstream 851091 3754566 ~ 3760957 (-) True XLOC_008957
TCONS_00019118 lncRNA upstream 1260103 4163578 ~ 4174873 (-) True XLOC_008970
TCONS_00017660 mRNA downstream 26750 2850965 ~ 2857961 (-) True XLOC_008944
TCONS_00017659 mRNA downstream 28349 2850965 ~ 2856362 (-) False XLOC_008944
TCONS_00017658 mRNA downstream 43034 2820768 ~ 2841677 (-) False XLOC_008943
TCONS_00017657 mRNA downstream 43034 2820768 ~ 2841677 (-) True XLOC_008943
TCONS_00017656 mRNA downstream 81398 2776506 ~ 2803313 (-) True XLOC_008941
TCONS_00017663 mRNA upstream 28407 2931882 ~ 2973368 (-) False XLOC_008947
TCONS_00017664 mRNA upstream 30072 2933547 ~ 2954443 (-) True XLOC_008947
TCONS_00017665 mRNA upstream 72645 2976120 ~ 2985599 (-) True XLOC_008948
TCONS_00017666 mRNA upstream 84118 2987593 ~ 3078600 (-) True XLOC_008949
TCONS_00017667 mRNA upstream 185737 3089212 ~ 3094516 (-) False XLOC_008950
TCONS_00017655 other downstream 148213 2736383 ~ 2736498 (-) True XLOC_008940
TCONS_00017647 other downstream 259048 2625028 ~ 2625663 (-) True XLOC_008933
TCONS_00017639 other downstream 618628 2265969 ~ 2266083 (-) True XLOC_008927
TCONS_00017627 other downstream 1046828 1834971 ~ 1837883 (-) True XLOC_008922
TCONS_00017597 other downstream 1562805 1321790 ~ 1321906 (-) True XLOC_008910
TCONS_00017689 other upstream 1200933 4104408 ~ 4104526 (-) True XLOC_008968
TCONS_00017694 other upstream 1461683 4365158 ~ 4365272 (-) True XLOC_008973
TCONS_00017700 other upstream 1523019 4426494 ~ 4482147 (-) False XLOC_008974
TCONS_00017702 other upstream 1531990 4435465 ~ 4482230 (-) False XLOC_008974
TCONS_00017735 other upstream 2479587 5383062 ~ 5383180 (-) True XLOC_008997

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000154_00012002_00016527.mRNA True 2145 mRNA 0.40 4 CI01000154 11501 ~ 17607 (+)