RNA id: TCONS_00017665


Basic Information

Item Value
RNA id TCONS_00017665
length 924
RNA type mRNA
GC content 0.52
exon number 3
gene id XLOC_008948
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 2976120 ~ 2985599 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGACCATCCTGATCATCCAGCGCTTTAAGGACATGAAGACCACCACCAACCTGTATCTCTCCAGCATGGCCATCTCAGACCTGGTCATCTTCCTCAGCCTGCCCTTCGACCTCTACCGCCTCTGGAAGTACGTCCCTTGGATCTTCGGCGAGTTTGTGTGTCGTCTGTCGCACTACATCAATGAAGGATGCACCAACGCCACCATCCTTCACATCACGGTGCTCAGCATGGAGCGTTACCTGGCCATCTGCTTCCCTTTCAAAGCCAAGGCGGCCATTACTAAGAGGAGGGTCAAATACGTGATCTTGGCTCTGTGGGGTTTTGCTCTTCTGTCCGCGGCGCCGATGTTCTTCTTGATGGGGGTGGAGTATGAAAATGAAACCATGCCTGATCCCGGGTCTCGACAGTGCAAACACACACGATACGCCATCGAGTCAGGGCTGCTACACACCACGATTTGGGTTTCAACTGCCTACTTCTTCTGCCCCATGTTTTGCTTGCTCTTCTTGTACGGATCCATCGGCCGAAAGTTGTGGAAGAGTCGGCATGAGCTTCATGGACCCAATGCGGCAGCCAGACAGAAGGTTAACAGGCAGACCGTCAAGATTCTGGctgtTGTGGTATCAGTCTTTGCCATCTGCTGGCTGCCGTACCACATCGGCCGCTTCCTCTTCACTCATGTGGATGACTATCACTccgctcggctcagtcagaactTCAACGTGGCCTCGATGGTGCTCTTCTACCTGAGCGCATCAGTCAATCCAGTCCTCTACAACCTGATGTCCAACAAATACCGCTCCGCCGTCAAACGTCTCTTCCTGCTGCCCCGCGGGCCACAttgggctcacattcagattacattttgccacaagtgccaaatctttgccttaaaaggcccatatatgaatttgaatctttag

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007165 signal transduction biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008528 G protein-coupled peptide receptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction
ko04030 G protein-coupled receptors

ZFIN:

id description
ZDB-GENE-130530-1015 Predicted to enable G protein-coupled peptide receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Is expressed in brain; gill; heart; liver; and pleuroperitoneal region. Orthologous to human MLNR (motilin receptor).

Ensembl:

ensembl_id ENSDART00000129886

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00017662 lncRNA downstream 45099 2918257 ~ 2931021 (-) True XLOC_008946
TCONS_00019114 lncRNA downstream 159978 2813516 ~ 2816142 (-) True XLOC_008942
TCONS_00019113 lncRNA downstream 350192 2618279 ~ 2625928 (-) False XLOC_008933
TCONS_00017646 lncRNA downstream 364950 2598804 ~ 2611170 (-) True XLOC_008932
TCONS_00018809 lncRNA downstream 379999 2590381 ~ 2596121 (-) True XLOC_008931
TCONS_00019115 lncRNA upstream 129738 3115337 ~ 3116262 (-) True XLOC_008951
TCONS_00019116 lncRNA upstream 174839 3160438 ~ 3162459 (-) True XLOC_008952
TCONS_00019117 lncRNA upstream 768967 3754566 ~ 3760957 (-) True XLOC_008957
TCONS_00019118 lncRNA upstream 1177979 4163578 ~ 4174873 (-) True XLOC_008970
TCONS_00017697 lncRNA upstream 1436882 4422481 ~ 4436431 (-) False XLOC_008974
TCONS_00017663 mRNA downstream 2752 2931882 ~ 2973368 (-) False XLOC_008947
TCONS_00017664 mRNA downstream 21677 2933547 ~ 2954443 (-) True XLOC_008947
TCONS_00017661 mRNA downstream 72645 2884711 ~ 2903475 (-) True XLOC_008945
TCONS_00017660 mRNA downstream 118159 2850965 ~ 2857961 (-) True XLOC_008944
TCONS_00017659 mRNA downstream 119758 2850965 ~ 2856362 (-) False XLOC_008944
TCONS_00017666 mRNA upstream 1994 2987593 ~ 3078600 (-) True XLOC_008949
TCONS_00017667 mRNA upstream 103613 3089212 ~ 3094516 (-) False XLOC_008950
TCONS_00017668 mRNA upstream 103613 3089212 ~ 3096150 (-) True XLOC_008950
TCONS_00017669 mRNA upstream 260724 3246323 ~ 3252727 (-) True XLOC_008953
TCONS_00017670 mRNA upstream 269455 3255054 ~ 3282220 (-) False XLOC_008954
TCONS_00017655 other downstream 239622 2736383 ~ 2736498 (-) True XLOC_008940
TCONS_00017647 other downstream 350457 2625028 ~ 2625663 (-) True XLOC_008933
TCONS_00017639 other downstream 710037 2265969 ~ 2266083 (-) True XLOC_008927
TCONS_00017627 other downstream 1138237 1834971 ~ 1837883 (-) True XLOC_008922
TCONS_00017597 other downstream 1654214 1321790 ~ 1321906 (-) True XLOC_008910
TCONS_00017689 other upstream 1118809 4104408 ~ 4104526 (-) True XLOC_008968
TCONS_00017694 other upstream 1379559 4365158 ~ 4365272 (-) True XLOC_008973
TCONS_00017700 other upstream 1440895 4426494 ~ 4482147 (-) False XLOC_008974
TCONS_00017702 other upstream 1449866 4435465 ~ 4482230 (-) False XLOC_008974
TCONS_00017735 other upstream 2397463 5383062 ~ 5383180 (-) True XLOC_008997

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000092_00156990_00162891.mRNA True 1324 mRNA 0.53 4 CI01000092 156990 ~ 162891 (-)
bowfin (Amia calva) AMCG00021408 True 1050 mRNA 0.65 2 CM030130.1 16653440 ~ 16655886 (+)