RNA id: TCONS_00017666


Basic Information

Item Value
RNA id TCONS_00017666
length 6357
RNA type mRNA
GC content 0.49
exon number 24
gene id XLOC_008949
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 2987593 ~ 3078600 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCTTCTCTGTTCATACTTTTCgccagcggatttgcaacgggtgcgggcgaaggatcgcgatgccgatgttgtctatcggacgaaccatacgtaatacgtacatagcagagcttgcaaaactgtgtttttttatcgacaacacaaacgttgtcaacataactcactggaaatccaaaatgcttccacaccggcgacttcattgaaagaggagagggtttaagctctgtcgacgggtctcctgcttctgcagtttgacaagcacttcaacaagcctgttactttcccgcttggcaagccaagctgacgtgacatgggggcgtggcagcatcgacaattctattttttgattcgataatcgaaattgagcataaatttcgatcgatttcgattaaaaatcgaaatcgtgacacccctgtTACTGAATAACCATCTCTTTTTCGCTTAATATTCTAGTTAGAATTAAACCGTGCCATGTGGAGAGCTGATGTTAGATGAAGGCAGCAGGAAGTTTagccttacattttttttttttttttgtcatcaagcCCTTTTAGGTTGGGTCGTTCAAATCAATACAGTTTATCTGTATTCAGCGATGTTGGCTGTCATTAGAGCGTTGTAGGTCATTTTATAGAGCAAGAGAATGTTTCCTTGAGGACTGAGCTAAATGGACTTTTCTTGTCTTCTTCAGGTAATCTTGGTGCAGGTAAACCCAGGAGAGGCCTTTACAATCCAGCGAGATGATGGTCAGTTTCAGTGTATCACAGGTCCTGCTCAGGTTCCCATGATGTCCCCAAACGGTTCAGTGCCTCAAATCTATGTGCCTCCTGGATACGTTCAACAGaTCATTGAGGAGAATGGCGTGAGGCGGGTGTTGGTCTTGCCTCAGACGGAGTTTCATCCGGGGGCCCATTCTCCGCTCCACCACGCGCCCCATCCTCCACCCCACACCCACCTGCAGGCCTTCATCCCGCACCCACACATCATGCACCCTCCCCCGCACCTGTACTCAGGCCTCGCTGGAGGAACCGGAGACATCCCCCAGTACATCTCCCAGTACCACCCAGCACACCCAGCCATCTACTCGGAGCAGGAAACTCACCCTCAACACGGCCGGGCGGCGTTCGCTCATCGAGATGAAAGGACTTGTAAAACCTACGAGCGTCTGCAAAAGAAGCTGAAGGATAAGCAGGGGGTGGGAGGTGGAGGTGGAGGCCTGGCGCTCTCCAAAGACAGTCCCCCTCCGTCCCCACAGAAGAACCTCGGGACACCCCCTGCAGGAGCAGCAGGAGAGCTCCAGAACGGGCTGGAGGGTAAGAGCAACGTGGATCAGGCACAGCCCAGCAACACCATCACCCGCCTGGGTAAAAGCCCAGTGAGAAAGAAGGAGGTGGAGCCTGGAGAACTGGACGAAGAAGCCAAGGCCCTTCAGGAACGATTAAACTCCATGTGCAAGCCAGTGGTGACAAACATCCAGGCCAGAGGGGCCAGTTTAACTTGGGTGTCCCCGTCGCGGACAGAAGGTGATGATGAGCCCAAAGAGGGAGAAGACGAGCCTGTGGAGCCCAACTTCACATATGAAGTCTCTATCTCTTACAACGGCAAAGATGGGAAATACAAGAGCGCCTACagTGGTGTGGAACTAAGTGCAACCTTACAAGACTTAAGACCAGCAACAGACTACCATGTCAGGGTCCAGGCGACGTGTAACTGTTTACAAGGCGTCCCATCAGAGGCTGTGAGCTTCACCACTCTGAGCTGTGAGCCTGACACTCCCAGTCCTCCCCGAAAGCTCAGCGGCACCAAGAGCAGCCTCGTCCTGCAGTGGAAGGCTCCATGTGACAACGGTTCCAAGATCCAAAACTATATCCTTCACTGGGACGAGGGGAAGGGAACGGATGCTACGTTTGTCCAGTGTTACTACGGCCCATATAAGCAGTACAGACTCACCAAACTCTCCACAGCTTCCAGATATTCCTTTCGGCTGGCGGCCAAAAACGACATGGGGGTCAGTGAATTCAGTGAAGTGGTGAACATCATGACATCCTGCAGTGTTCCTGCTCCCCCTCTGAGCCCTGAGTTGGTTCAGTCTGGGGTCACATGGCTATGCATTCGCTGGCACAGACCCGCCGGATCGCCCAAAGAAGACGACACCGGCTACGTGCTGGAGATGGAGGAGCAGGGATCCGGTTATGGATTCCAGGCCAGTTATGATGGAGAAGAGCTTTCACACACTGTCAGAAACCTCCACAGAAGCACCACGTACAGGTTCAGGGTTGTGGCCTATAACACGGAAGGGAAGAGTAACCCCAGTGCTGTGTCTGAGTTCACCACTGCTCCTGACAGGCCCAGCTGCCCGTGCAGACTCGCAGTGAAGGGAAAACCTCACCCGACCAGCTTCCGTCTGACCTGGGATCCTCCTAAAGACAGTGGTGGCTCAGATGTGACTAAGTATGTGGTGGAGCTTTCAGAAGGGTTAAGTGGTTCCTCCTGGAGTCAGGCGTACAGTGGTTCGGCTCTGGAGTGTGTTTGTGATGGTTTGAGCCCAGGATCTTCATATCAGGCCAGAGTTCACTGCATCAGTGCGGGAGGAGAGAGTCCGtTGACGGAGGCCTTGCAGGTCCAAACGCCACCAGTTCCTCCTGGTCCATGTCAGCCGCCCAGGGTCGTGGGTAAACCCAAAGCCAGAGAAGTGCAGTTACGCTGGGCGCCCCCACTGGTGGACGGTGGTAGCTCTGTGAGTTTGTACAATCTGGAGATGTTCGCGCCACAGGTGGACGAGGCCAGAGAGGTGTACCAGGGCTCTGAGCTGGACTGTACTGTGCCCAGTTTATTGCCAGGCAGGACCTACGGCTTCCGGATTAGAGCGGCCAATAAAGCTGGATATGGGCCTTTCTCGGAGCGCTCTGAGGTGACGACGGGCCCTGGGGCCCCAGAGGCATGTAGGCCCCCTCACATCACTTGTAAATCCCCCACGTGTGCTGTGGTCAGCTGGGAGGCTCCGGTCAGTAATGGGGCAGTGGTGTCAGAGTATCGTCTGGAATGGGGCGCAGCCGAGGGCAGCATGCAGGTGTGTTACAGCGGTGCCGCTCTCTGCCACGAGATGAGGGGTCTGCTGCCCGCCAACAACTACTTCTGCAGAGTCCAgGCGGTGAACGCTGCGGGCGCCGGCCCCTTCAGTGAGCTGATGTTCTGCCAGACGCCGTGTTCGGTGCCAGCGATGATCAGCAGCGTTCATGCGCTCCGAGATTCTGAGATGAAGATCCAGGAGCGAACAGCGGAAAgaggagaagaggaggaggaggacgaagaggaggatgaagagtCTGCCATGCTCTACTCTCCATCCACATGTCTGGGTCTGCGCTGGGAAGCTCCTTGTGACCACGGATCACAAATCACATCATATCTGATCGACCTGGGAGAGAAACAACCCATCCTCACCGGACCGGTGACCCAGTACATCATCCAGAACCTGCAGCCGGACACCACCTACAGGATACGGATCCAGGCTCTGAACAGTCTGGGCACAGGACCCTTTAGTCACACCTTTAAACTGAAGACCAAGCCACTGCCACCGCTGCCACCCCGTCTGGAGTGCACGGCGTCCAGTCACCAGACCCTCAGGCTCAAATGGGGCGACGGTCCGGCCAAAGCGCAGCCCACCGACTCCCTACAGTACCATCTGCAGATGGAGGACAAAAACGGGAGGTTTATATCCTTATATAAAGGACCGTGTCACACTCACAAAGTGCAGAGGCTAAATGAGTCTACCTCGTACGCTTTCCGCATCCAGGCCTTTAATGAAGCGGGCGAGGGGCCGTTCTCCAGCGTTTACACCTTCACCACCCCGCGCTCCCCTCCTGCACCCCTCAAAGCTCCGAGAGTGGAGCGTGTGGACGAGTCGTGTGAGGTCAGCTGGGAGACGCTGCCACCAATGAAAGGGGATCCAATCATCTACTGTTTGCAATGCATGCAGGGAAATTCAGATTTCAAACAGATCTACAAGGGCTCGTCCAGTTCCTTCCAGCTCCCCAACCTGAGCTCCTCCATGGACTACCGCTTTCGGGTCTGCGCCATCAGGCAGTGTCAGGATGCCCCAGAGATCATCGGGTCTTACAGCTCCACCGTCATCTTGCTGCCAGCCCGCGTGGACGGCCCCGGGCCCACAGGCTCCAGCGGCTCCAAAACAGCCGAAAACCAGAAACCAAAACGCAGCCTGACCGACGAACAGTTTTCCTTCCTGATCATCGCCCTGCTGGCCGTGACCTCCATCCTCATCGCCGTCGCTATACAGTACTTCGTCATCGAATGAGTGTCGTTCGTTTTCGTTTCTTTCTAGTTTCATCACGAAAACTGGAAAACAATTTTTTCGTCCAGTGGTTCCCGCTGTCTTGAGAACGTCCCGTATTTCCATCGGACTTATTTTGAAGGATCAGCAGTGAAGCTTAACGCTCGTCGTCGTCGTCTTTACACATTTATTCGTGTAGCTGTAGTCTTTATGTTATTTATATTCGTATAATTTCGTACGTTTGCGATTTCGGGACTTGAGGGCCAGTTTTGCGAACTGAACCCCCGGGAACGGTAAAATTTCGAGGATGTACGGTGGAGAACGCTGCAATTAGCGAACGTTGATTTAGCACTTTCAtaagaacgtttttttttttcgtttgtttttttttttttttgatgttcagAATGTGTAAAGGATGCAAAAATAACTAGAGAAATATGTTAGTATATTTTTGTACAGTATGATACGAGGACCTGAGATTCTGGATTAGTACGTTTTGGGGGGGGGCGGGGATTATGACTATGAATACCAAACTAACTCAACTTAATAGTTATTTTTACGATCATGTACGTTATTTAGTTCTACCGTAGCTTGTTTTTACAATCAAGCAGCTGCTTTCGCTCCGAAATATTGTCGTTCAGCACAAACAATGTAAGCTTTCTCGGAAACCTTTCCTTCAGTCGTTATCTTTGCACCTTagtgagaaaaaacaaacaatttacttATTGAATGCGTCTTGATCTCGTGAAGCGTTTTATGGATCATGTTCTCCAATTGTGCAAGCCCTCGATgtgtttttaagaaaaaaaataacgtaGTAACACAATAATGGTTCTTGAGACGGTTTATTCAGACAATAATCACGAAATCGTAGTGTTTTCTTAATTTCTctatttttttgttggttttttagttttagtaacCAAATTATCTCGTTGTGTGAATCGTTACTTTTAGCAATATTATTTTCGTAACCTCCAGAGTATGGATTATAGGAGTAAATATTCAGATATCGTTTCTCGTTTAAACAAAACCCCCacacatttgtgtttatttttttatacgcGAAGCATTTAAGTTAATTACGTCCAGCGGAGGAATTAAGAAAAGCGCAAGAAACGAAACACAAACTGCAGTAATGAAATTGTGTTACTTCCTGTGAATCGGAAATGTTTTGCCTTTTTCTCTGTGTGTTTAAAGTCTTGTGACTGATTATCAGTGCTGATTATCGATTCGGTCATGTCGTGCTTTGGTTTTGGGCATATGAGTGCTGTCAACAACCGTTACCAACTACAGGTAGCTTGCAAGAAGTCTTGGATGAAAATGAATTACGTGATTTGGTCTACTAGATATTCTGTCTTCTGTTTGTCATTGAAGGGaagtaaacaaaaagaaaaacgaaACAACTCAAATTCCTATTTTTGATAGTGATCAAATGTAATTGCGAAGTGTGCCATTTTAACGCCTCCCCACCATGATAACCTCTGGTTCTTGGGAGAAAGGaaaactacaacaacaaaaaaacaaacaaacaaaaatcaataaaatatgcacaaaaaatgagaccatttttatgtaattttaatgtTTGCAGTTACCTCATACACCGTACATTCCAAAATAACAATTTGTTAAAGTATACATGCTAGCAGACATATCACTTTAAAATGTTCGTTATGAGATAGGAGATGTATAAtcctatgtgtatatatatatatattaagagtgTCTGTATAGCCATGATATCTACAGACAGATCCATGCACAATAAAAGATTTATAATTCTTAATTGTATTCTTTTACTGtatgttgagtgtgtgtgtgtgtgtgtgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgttcgtgcgtgcgtgcgtgtgtgtgtgtgtatgtgtatgagtgtgtatatacactacctgacaaaagtcttgttgtcgatcccagttgtatgAGCAACAACTCATTTGTTAAAGTGGTAGAGGGTGGATatttctgatggatcatctgGTGAGCTGCATCCCACTCATCAGCTGGACGTGGTCtcatgacaa

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-7015 Acts upstream of or within medial fin development. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including brain; cloaca; median fin fold; notochord; and tail bud. Orthologous to human FNDC3A (fibronectin type III domain containing 3A).

Ensembl:

ensembl_id ENSDART00000172842

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00017662 lncRNA downstream 56572 2918257 ~ 2931021 (-) True XLOC_008946
TCONS_00019114 lncRNA downstream 171451 2813516 ~ 2816142 (-) True XLOC_008942
TCONS_00019113 lncRNA downstream 361665 2618279 ~ 2625928 (-) False XLOC_008933
TCONS_00017646 lncRNA downstream 376423 2598804 ~ 2611170 (-) True XLOC_008932
TCONS_00018809 lncRNA downstream 391472 2590381 ~ 2596121 (-) True XLOC_008931
TCONS_00019115 lncRNA upstream 36737 3115337 ~ 3116262 (-) True XLOC_008951
TCONS_00019116 lncRNA upstream 81838 3160438 ~ 3162459 (-) True XLOC_008952
TCONS_00019117 lncRNA upstream 675966 3754566 ~ 3760957 (-) True XLOC_008957
TCONS_00019118 lncRNA upstream 1084978 4163578 ~ 4174873 (-) True XLOC_008970
TCONS_00017697 lncRNA upstream 1343881 4422481 ~ 4436431 (-) False XLOC_008974
TCONS_00017665 mRNA downstream 1994 2976120 ~ 2985599 (-) True XLOC_008948
TCONS_00017663 mRNA downstream 14225 2931882 ~ 2973368 (-) False XLOC_008947
TCONS_00017664 mRNA downstream 33150 2933547 ~ 2954443 (-) True XLOC_008947
TCONS_00017661 mRNA downstream 84118 2884711 ~ 2903475 (-) True XLOC_008945
TCONS_00017660 mRNA downstream 129632 2850965 ~ 2857961 (-) True XLOC_008944
TCONS_00017667 mRNA upstream 10612 3089212 ~ 3094516 (-) False XLOC_008950
TCONS_00017668 mRNA upstream 10612 3089212 ~ 3096150 (-) True XLOC_008950
TCONS_00017669 mRNA upstream 167723 3246323 ~ 3252727 (-) True XLOC_008953
TCONS_00017670 mRNA upstream 176454 3255054 ~ 3282220 (-) False XLOC_008954
TCONS_00017671 mRNA upstream 176964 3255564 ~ 3277635 (-) True XLOC_008954
TCONS_00017655 other downstream 251095 2736383 ~ 2736498 (-) True XLOC_008940
TCONS_00017647 other downstream 361930 2625028 ~ 2625663 (-) True XLOC_008933
TCONS_00017639 other downstream 721510 2265969 ~ 2266083 (-) True XLOC_008927
TCONS_00017627 other downstream 1149710 1834971 ~ 1837883 (-) True XLOC_008922
TCONS_00017597 other downstream 1665687 1321790 ~ 1321906 (-) True XLOC_008910
TCONS_00017689 other upstream 1025808 4104408 ~ 4104526 (-) True XLOC_008968
TCONS_00017694 other upstream 1286558 4365158 ~ 4365272 (-) True XLOC_008973
TCONS_00017700 other upstream 1347894 4426494 ~ 4482147 (-) False XLOC_008974
TCONS_00017702 other upstream 1356865 4435465 ~ 4482230 (-) False XLOC_008974
TCONS_00017735 other upstream 2304462 5383062 ~ 5383180 (-) True XLOC_008997

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000092_00174874_00180333.mRNA True 584 mRNA 0.58 5 CI01000092 174874 ~ 180333 (-)
rainbow trout (Oncorhynchus mykiss) TU2387811 True 2273 lncRNA 0.43 4 NC_048591.1 46758987 ~ 46761993 (+)