RNA id: TCONS_00017676


Basic Information

Item Value
RNA id TCONS_00017676
length 5230
RNA type mRNA
GC content 0.43
exon number 9
gene id XLOC_008958
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 3926095 ~ 3940671 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aaacgtaagtgaccggttatgaaaatgaagtgaggtgtcgcggacctcttttccagcgcactatgcgcggatataactgaggacgcgcgggtgctgagggagggaggtgtcacgaacactgcgctctctattctgccgccctatgcacggatataactgaggacgcgcgggtgtcgcggacctcaattctgccgccctatgcacggatataactgaggacacgtgGGTGCTGATGAAAGTGTccctgacgccgccctctctattcttgcgtctatgcgcgaatatatctgaggacgcggatggtgagggaggtgtcgcggacacaactgaggacgcgggtggtaagggaggtgtcggggatgccgccctctctatactgccgccctaggcggccgcctaggtcgcctctatagacgcgccggccctgtatatatatatatatatcaaacaatCCTAAAAGTAAAAGGcacttttgtcattatttatttatttttttttattagtttttttgtttatttatttttgtcactcATACAGAGTTTAAGAACTGTTTTGTTTGGGAACACCTTCCACATATTCAACTATGAGTGGAAGAAATCATTTTTCAAGTTCCGGGAGCCTTTCTCTGAGATGGCGTATGCTCTGGAAACTGAGAGGGGAGGAGCGTGTGCTGTTCAGATGGTGGTTCAGGCTCATATTATTAAATACTTGCTCTTCAATCGGTCAGCAGAATCAGACTGTACAATTCAGAGTATGATGACTGTAGGAGAGATGGAGCAGAGGAAGGCACTGGCCGCTGCTCTGACTGATATCTTGTGGGCCGCTGGTGAGGAGGAGACAGTCACCGTGTGTTTGGTGACGTCAGAGCGCTGCTTCACGCCACACCTCAACTACAAACTGGACAGCTTCACTGAGAGATTGCAGCTTTTCACCTTTAAGAAGAAAGAAGAAGCTAGAGCATTCATATATGAGCATATCCAATGTTTCAGGGAAGAAGGAAGCCATGGAATCATACTCTTTCTTTATAGTCTTATCTTCTCCAGGACAATCGACAGGATACAGACAGACTTGGATTGTACCACTACACAACTTTTGCATCTTCGCTTTGGGAATTTTGTTTGTCGACAGGCTTTAATTAACCTGCTGTTGACGGGCCGTGCGACTCCTCATGTCTTCAATGGTACATCCCATTGCAAAGAGCAAGACAAACCTCTCTATGGTGTTCTGACCCGCAGCAATGTCGGATATCTGCTCTGGAACAGGGATCAAGTCAACCACGCACAGCTCCCACTGGTGGGCAGCATGCTGAAAACCCCCAAGCTGCCTATCTGGGTGTGCAACATCAATGGCACCTACAGTGTTTTGTTCGGCACAAACTGTTCACTGCTGTCTGACTGGAAGATGGAGCATCTTTTCCTGCTGTATTTCTACAATGGCCAACCGACTCAGCTCAACACAACAACACTCTCTATAGATACACATTCCCATCACTGGGAGGCTGACAGTAATGACAGTCAGGGAGACCCAGAGAAAAAGTTCCCATCTCTGGAGATGACCATCCGGACCAAGTGGGAAGGTGCTGTCATTGACTGGAATGGGACGGTGCCTTTTTTCTGAAGGATTCAGGAGTGCCTGATATATAGACAAGTAGACTACCTCTTCCGCAATTGAGTTGATTATACTGGTTTTAATTATTGccttgtaaatattattattgcctCTAACAACACACCAGTTTGACCATAATAACCAACAATATGTAGGGTGACCATACTTCAGTTTGCAAACAAATGTGTAAAAACCATGATGAAGTATATCTTGGAGGCTGTTTTCGCAGAATGAATCCAGATAGGTTTAtcgactgaagggctttattctgtgtaAACAACTATCCTGGATGTACTTTTACCttcttattacatggctacttgcaaCAAATCATAAAAactagacacaaaacattgttcagaGCCGTAATGCTTTATAATTCTGTaattaaacacaaagctgacagaaacgaaaacagctgagtggagtatacactaacctgcgcattattcagttcAGTTAAATTCGATTTATGTTTAAttctttagcgcttttacaatgttgattgtgtcaaagccgcttaacatagaagttgtagCTAATTGAAGCtgtgttagtccagttttcagagttgaagttcagtttagtgtggttaaaatgtcactgctgaaagtctgaACACTAataagcaaatccatcgatgtgcatctccacaagtcccaaaccaagcaagtaaGTGGCGAGGAACCAGACTTCATTAAtcgacgaaagtgaaggaaaaagacCTTGAGTGAATCCAGGCTcaattgggcacgaccatttctccactggacAGACTTcttatgcagagctgcagtctaggcgctggaggctggagaacgctggacgctGAAACAGCCAGGTGTTCAGGCAGGCCTATgggatcaatgcgaagactcgtctgtcactgtggtctttcaggaattagtctcatgctctccgctcctccatgactaccacagcatcagctcaggatacggcctggtccaagattatggataccttggtaTCATTTCTTTACAGGTCTTGGAACCCATCAAAGGCGCTGCATAATATCTACAGTCTTGGGATGAGTATCCTCGGGTGGAAATAGAGAATTAAAGTATAGGGAGTATAGAAATTCAGGCTTTAGATATTTTTGAAATCCTGGCAGAAAGTCCCaatgttcagaaaaaaaagagtATGTATGGACACCCTAAACATAAGATCATTTTCCAAAAAAAGGAAGTTATGTTACATATTTAAATCTGATTTGCACATGTCACTCATGGTTACCTCTTTCCTGGTGTCTCTATGATTTTTCTTCCACAGTGTGGCTGTGCTTCAGTTTGGATCTGATATATGGGTTCAAGTAGATAGTATCAAATCTCAAGGCTAATCGCTGTTCTGAAGTCGTTTTATGTTCCAGGCTTTAATTATTAAGTTAACAGTGTTGAGAAGTATCTAACTACTGGCATAACTAGATTTTTTTCTGTAGTTTGAAAGTAGCTTCTTATTAATCGCTGGAGCTTTTTTCAGTGGTAAACTATTGGAACGGTAATTATTGTGAACAGCGCTATACAAGTAAACTTGAATCGAATTTTTCCAACAAACAGCTaccctacctgacaaaagtcttgtcgtcgattccagttgtaagagcaacaaatattaacttgacttctagttcatTATTTGGAAAATTGGCAGAAGGTAAATCCCAGCTGCACCCCAATCATCACACAAactgcagaagatctactggAACCCGCAAGAACCCAAGATTCtgtagaaatcagtcaagttttgtaaaggaaaaatcatggttcggggttacattcagtatgggggaatgcaagagatctgcagagtggatggcaacatcaacagcctgagggtatcaaaacatttgtgctgcccattacattacaaaccacagcagagggtaAATTCtctagcaggatagcgctccttcatacttcagcctccacatcaaagctcctgaaagcagagaaggtcaaggtgctccaggacctTGATGAACATGAccaaatgaacattattgagcatgtctggggtaaattgaagaaggaggcactgaagatgaatccaaataatcttaatgaactctgggagccctgcaggaacactttctttgccattcctgtTGACTTTAATAAGAGATTTGAGTCgtgagatgtatggatgcagtcctccaagctcatgatggagtcacacacaacacacaataTTTACCCTTTTTCCACCGCagaatgactttatattctatactggacattacttCTGTTTGGTGACAAGacctttgtctaagcaaagtcagacctgactgtcctaattaaataattaaaaatcaagacatgatcatatttaatttggtgaaataaaaataatttagaggcctttgcctttaatttaagccacttctgagacCATGTTATCAACAAGCAGTGAAATTATCATTTGTTGTTCATAAAACCTGGATAGGCGacacgacttttgtcaggtagtgtacattctGTTATGTTAACCTGCAATAGTCTGAAGCAGCACAGCGTACAAGATCACATACTACAATATTGTATTACAGCCATCTATTGGTGTATCACACATCTCACAGTTtcacattaatttattattattattttgtaaataatattgtagGTAATAAGCATAATATATTGTGAGGACAATATAATTTCCTACCAAAATGGAATGGAGCCATCTGTCACAGTTTGTTATTGTTACAGTACTTTAATTTTTGATTTTGCGGTGCAGTtttgtactttatttaaaaactgtgtgTAATAAAACATTTGCCTTTGACAGCATAATTATATTGCAtgttttaagcacttttttgGGGGCGtaacggtggcttagtggttagcactgtcgccacacagcaagaaggttgctggttcgacccctggctgggccagttggcatttgtgaggagtttgcatgttctccccatgttggcgtgggttttttccaggtgctcaggtttcccccacaagccaaagacatgcgctacaggtgaattgaatacactaaattggctgtagtgtcattcattcattcattttcttgtcggcttagtccagaggtggccaaccctgttcctcgagagccaccttcctgcagatttcagttgctacccatatcaaacacacctgaaccaattaattaggacctgaacataacgtgataattacaggcaggtgtgtttgatatgagttgcaactgaaatctgcaggaaggtggctcttcaggaacagggttggccacccctggctcagtccctttattaatccgaggtcaccacagcggaatgaaccgccaactcatccagcatgtttttacacagcggatgcccttccagccacaacccaactctgggaaacacacgcacatacattccctcatacactacggacaatttagctacccaatttacctgtaccacatgtctttggactgtggaggaaaccggagcacctggaggaaacccacacaaacgcagggagaacatgcaaactccacacagaaacgccaactgagccgaggctcgaaccagcgaaccagcgaccttcttgctgtgaggcaacagcactacctacggcACCACTGTGTAGCCTGGCTG

Function

GO:

id name namespace
GO:1990380 Lys48-specific deubiquitinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-140127-1 Predicted to enable Lys48-specific deubiquitinase activity. Predicted to act upstream of or within protein K48-linked deubiquitination. Is expressed in neuromast. Orthologous to human MINDY4B (MINDY family member 4B).

Ensembl:

ensembl_id ENSDART00000189741

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019117 lncRNA downstream 165138 3754566 ~ 3760957 (-) True XLOC_008957
TCONS_00019116 lncRNA downstream 763636 3160438 ~ 3162459 (-) True XLOC_008952
TCONS_00019115 lncRNA downstream 809833 3115337 ~ 3116262 (-) True XLOC_008951
TCONS_00017662 lncRNA downstream 995074 2918257 ~ 2931021 (-) True XLOC_008946
TCONS_00019114 lncRNA downstream 1109953 2813516 ~ 2816142 (-) True XLOC_008942
TCONS_00019118 lncRNA upstream 222907 4163578 ~ 4174873 (-) True XLOC_008970
TCONS_00017697 lncRNA upstream 481810 4422481 ~ 4436431 (-) False XLOC_008974
TCONS_00017701 lncRNA upstream 488347 4429018 ~ 4445598 (-) False XLOC_008974
TCONS_00017703 lncRNA upstream 504389 4445060 ~ 4485867 (-) True XLOC_008974
TCONS_00018810 lncRNA upstream 1261580 5202251 ~ 5203167 (-) True XLOC_008986
TCONS_00017674 mRNA downstream 189322 3656212 ~ 3736773 (-) False XLOC_008956
TCONS_00017675 mRNA downstream 189946 3735068 ~ 3736149 (-) True XLOC_008956
TCONS_00017672 mRNA downstream 391390 3454529 ~ 3534705 (-) False XLOC_008955
TCONS_00017673 mRNA downstream 460080 3455839 ~ 3466015 (-) True XLOC_008955
TCONS_00017670 mRNA downstream 643875 3255054 ~ 3282220 (-) False XLOC_008954
TCONS_00017677 mRNA upstream 7025 3947696 ~ 3956906 (-) True XLOC_008959
TCONS_00017678 mRNA upstream 17205 3957876 ~ 3963649 (-) False XLOC_008960
TCONS_00017679 mRNA upstream 20738 3961409 ~ 3963649 (-) True XLOC_008960
TCONS_00017680 mRNA upstream 30126 3970797 ~ 3976035 (-) True XLOC_008961
TCONS_00017681 mRNA upstream 68901 4009572 ~ 4011013 (-) True XLOC_008962
TCONS_00017655 other downstream 1189597 2736383 ~ 2736498 (-) True XLOC_008940
TCONS_00017647 other downstream 1300432 2625028 ~ 2625663 (-) True XLOC_008933
TCONS_00017639 other downstream 1660012 2265969 ~ 2266083 (-) True XLOC_008927
TCONS_00017627 other downstream 2088212 1834971 ~ 1837883 (-) True XLOC_008922
TCONS_00017597 other downstream 2604189 1321790 ~ 1321906 (-) True XLOC_008910
TCONS_00017689 other upstream 163737 4104408 ~ 4104526 (-) True XLOC_008968
TCONS_00017694 other upstream 424487 4365158 ~ 4365272 (-) True XLOC_008973
TCONS_00017700 other upstream 485823 4426494 ~ 4482147 (-) False XLOC_008974
TCONS_00017702 other upstream 494794 4435465 ~ 4482230 (-) False XLOC_008974
TCONS_00017735 other upstream 1442391 5383062 ~ 5383180 (-) True XLOC_008997

Expression Profile

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