RNA id: TCONS_00017679


Basic Information

Item Value
RNA id TCONS_00017679
length 942
RNA type mRNA
GC content 0.48
exon number 3
gene id XLOC_008960
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 3957876 ~ 3963649 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGAACAGCATTTGTGTGATCAACGACAACATGGTGCCGTTCGCCACAATCTACATCATCATCTTCCTGATTGGGATGGTGACTAGCTTGGTGGCTCTGTGGGCTTTCATAACTAGCCGTAGTGCTAAAAAGTGCATCAACGTTTACCTCATCAATCTTCTAACATCAGACTTTCTCCTCATGTTAGCATTACCCGTCAAGATTGCCAAAGATCTTGGCAATGCCTCCAAAGGTTTGACCATCTTTCACTGCCAAGTGAGTGGGCCGCTTATTTACATAAACATGTACGCATCCATCATCTTTTTAGCATTTGTTAGCATTCAGCGCTACCTCCAGATCACCCGCAGCTCCAAACTACTGCGGCTACAGGACGTGGGATTTGCGGTGCTGATGTCCTCTGTGGTTTGGTTCCTCGTACTCTTCATCAACGTACCCAACATGGCCATCCCCATCAAAAAAGACATTGAAGATAAAGTTGGCTTGACGTGCGCTGACTTAAAAGAGGATTTGGGCAAGCACTGGCATGCGTTGTCTGTGTTTCTGGGCATGGCGATCTTCTTCAACGCGTCGGTAGCCGTGCTTTTGTCCAACGGTCTGGTTTTGAGGAAGTTTTGGAGTCAGCATGAATCTGAGCCTGAGGAAAAGGCTATCGCCCGACATGCTGTTGTAAACATTGCATTGGTGACATTGGCTTACGTAGTGAGCTTCGTGCCGTATCATGTTGTCCGCATGCCGTACACCTTCACGCAGATAGAGGTCATCACTAAATGCACCTTAAAGAAGAGTCTCTTCTTGGCTAAAGAGTCCACTCTGCTTCTGGCCATCCTGCATCTGTGCTTTGACCCTGTGCTGTACTTTGTTTTTTGCCGCGCATTCAGGTATCAGATCACGAAGGCCTTCACTAAGAGAGACAGCCAAAAGCCCAGGGTGATCGCAGcttaa

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0045028 G protein-coupled purinergic nucleotide receptor activity molecular_function

KEGG:

id description
ko04030 G protein-coupled receptors

ZFIN:

id description
ZDB-GENE-131121-339 Predicted to enable G protein-coupled purinergic nucleotide receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human GPR171 (G protein-coupled receptor 171).

Ensembl:

ensembl_id ENSDART00000171738

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019117 lncRNA downstream 200452 3754566 ~ 3760957 (-) True XLOC_008957
TCONS_00019116 lncRNA downstream 798950 3160438 ~ 3162459 (-) True XLOC_008952
TCONS_00019115 lncRNA downstream 845147 3115337 ~ 3116262 (-) True XLOC_008951
TCONS_00017662 lncRNA downstream 1030388 2918257 ~ 2931021 (-) True XLOC_008946
TCONS_00019114 lncRNA downstream 1145267 2813516 ~ 2816142 (-) True XLOC_008942
TCONS_00019118 lncRNA upstream 199929 4163578 ~ 4174873 (-) True XLOC_008970
TCONS_00017697 lncRNA upstream 458832 4422481 ~ 4436431 (-) False XLOC_008974
TCONS_00017701 lncRNA upstream 465369 4429018 ~ 4445598 (-) False XLOC_008974
TCONS_00017703 lncRNA upstream 481411 4445060 ~ 4485867 (-) True XLOC_008974
TCONS_00018810 lncRNA upstream 1238602 5202251 ~ 5203167 (-) True XLOC_008986
TCONS_00017677 mRNA downstream 4503 3947696 ~ 3956906 (-) True XLOC_008959
TCONS_00017676 mRNA downstream 20738 3926095 ~ 3940671 (-) True XLOC_008958
TCONS_00017674 mRNA downstream 224636 3656212 ~ 3736773 (-) False XLOC_008956
TCONS_00017675 mRNA downstream 225260 3735068 ~ 3736149 (-) True XLOC_008956
TCONS_00017673 mRNA downstream 495394 3455839 ~ 3466015 (-) True XLOC_008955
TCONS_00017680 mRNA upstream 7148 3970797 ~ 3976035 (-) True XLOC_008961
TCONS_00017681 mRNA upstream 45923 4009572 ~ 4011013 (-) True XLOC_008962
TCONS_00017682 mRNA upstream 54713 4018362 ~ 4023182 (-) False XLOC_008963
TCONS_00017683 mRNA upstream 54713 4018362 ~ 4027367 (-) True XLOC_008963
TCONS_00017684 mRNA upstream 73060 4036709 ~ 4037626 (-) True XLOC_008964
TCONS_00017655 other downstream 1224911 2736383 ~ 2736498 (-) True XLOC_008940
TCONS_00017647 other downstream 1335746 2625028 ~ 2625663 (-) True XLOC_008933
TCONS_00017639 other downstream 1695326 2265969 ~ 2266083 (-) True XLOC_008927
TCONS_00017627 other downstream 2123526 1834971 ~ 1837883 (-) True XLOC_008922
TCONS_00017597 other downstream 2639503 1321790 ~ 1321906 (-) True XLOC_008910
TCONS_00017689 other upstream 140759 4104408 ~ 4104526 (-) True XLOC_008968
TCONS_00017694 other upstream 401509 4365158 ~ 4365272 (-) True XLOC_008973
TCONS_00017700 other upstream 462845 4426494 ~ 4482147 (-) False XLOC_008974
TCONS_00017702 other upstream 471816 4435465 ~ 4482230 (-) False XLOC_008974
TCONS_00017735 other upstream 1419413 5383062 ~ 5383180 (-) True XLOC_008997

Expression Profile

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