RNA id: TCONS_00017680


Basic Information

Item Value
RNA id TCONS_00017680
length 2549
RNA type mRNA
GC content 0.42
exon number 2
gene id XLOC_008961
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 3970797 ~ 3976035 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tcctttttctctctccctctcttgtgCATTTAGATGGAGTCGGCAGCTTCAGAAATTCTTCGAAGTGCAGAACCACTAACCAGCTTCACCGCTGACCTCAATGGCATCATAGAGGCAAATTGGACTCGCACAGAAGCAAATGTTTCCTGCGAATTGTCCAAGATCCCAGCTCATCCTGTTTTCATATTTGCATACTCTCTTGTGTTTCTTGTCAGTCTGGTGCTGAACTGCGTCACGATGCGGGTGTATTTCTGCAACAGACAACGTGTACAATCCAGTGTCACAGTCTACATGAAGAACCTGGCAGCGGCTGATTTCTTCCTTTGCCTTTGTTTACCTTTGCGCATTGCTAACTATGCTAGCAGTTCAGAGACCATGCGCAATATTTACTGCAGCTTCGGAGCAACTGGATTTTATATCAACATGTATGCAAGCATTCTCTTCATGGACTTCATCGCTGCAAACAGGTACCTGAAGATAGCCCGTCCATTGGAGACTCACACCCTTCAGACAGTCCGTGCCGCCCGCCACATTTCTGTAGCGACGTGGATCTCTCTGTTGGCCTTGTCTTCAGTCTACCTGATCCTCTTTCTCAAGACATCCTGGAGTTACACTTACACCTCTGAGAAAATGGGCTGCGAGGCTTTGCACAGTCCCCAGCTCAGCCTGGCCTACAAAATCACTCACAGCGTGTCCATGGTGGTCTTCATTTTTGTGCTTGTATCCCTGATCGGTCTCTATTGGCTGACGCTACAAAAAATCCGGGAAGCTCAATTGTCCACGCAGGCCACGTCCAgcaaaaacatgttcaaaaagtCGAAGCGCAACATGCTGGTGCTGGTGCTGGTTTTCTGCGTGTGCTTTGTGCCCTATCACTTGGTGAGACTTCCTTACGCGTTTATCAAACTTCAGACTAAGTCTTGCACGCTGCAGGCGGTCTACGTCCTGAAGGAACTGACGGTTCTGCTATCGGCGCTGAATGCGTGTTTGGATCCACTCATATACTTTATCTTCTGCAAGGCCTTCAGAGCCCAGCTGAACCTCAGGAAGAGGGGAGATTCAGGGATAAGCAGCGACGATAAAGGCAACAAAAGACGAATGAGCAACATGTTGACCTACATCGAGACAAAGGTGTCCACGCTAAGACGTGAAAGTGTTATCTAGCACACAAATCCTAAGGGATGACAACAAGGTCCATTATAGAGTGGTTCGTTTAAATGGTACCTGTATTGTTTACGAATATAAGACTTCTTCCTTTTTCTCTTCCATTGCTtgtaatgcctcattcacactggcatcgactttgtagctgcctgtcgctcttgGTGGCGgcctgctgcaaacgcaggtctgcGAAGGTCTACAGCAGGAGTCACCAAatctgttcctggagggccggtgtcctgcagattttagctccaaccctaatcaaacacacctgaacaagctaaacaaggtcttactaggtatacttgaaacatccaggcaggtgtgttgaggtaagttggagctaaaccctgcaggaacaccggccctccaggaccgagactggtgacccctggtctacagcaTGGAGAATACAACCAGCCTTTTAACGAGCTgcgagaggatcatgtgagctctacAGGTGCTTCTGTTAGCTGTCGCTCAATAAAGacactcttcatttgcataaagttgaaggattcttaTATTTGTTGCATCACTTGACATGCCCACCTGGTCACCAACGGTCGCCGGAAGTCGCTCATTCTCAGTTGAAATGAACAGTCGCTTGTTGTTTTGCCGCTGTGAGtcgctcgtagtgtgaatgaggcttaaatCAGTTGGAAGACATTCATTTTGAAGAtgctgattgatttttttttctgaatttggGCTGTAAATATGCCTTATTATATGCCTTAATACCAAAAACACAAACAGGAGTTGTGTTTGTTGTAGTAGTTCTTATAATTCTTTGacataaagtgacttttattactATCAAATCATTTCTGTTtgcaataaatgctatttttttaacttgatttttttcaaaacatcctgaagaaaaaagcaagaaaaaagtcttaaaattaatAAAGACCAAATCAGTATTTGACTGTGATTTTCTGAAGGACACCGAAGACTGGAAGAAGGAAGCAAAAAAACTGCCagcagaaatatataaataatatttaaaaaatattaaaaaattatattttataaaagctTTACTATATTTTTCCTATTTTTGTCTGTGTAAGTAGAAGagacttttttttccaaaaggtttagaataataataataataagaagaagaagaagaagaagaagaagaagagaaatgATGAATAAAATGAAACCTTGTATATAATGTTGGAAATCACGTGGACATGTAGATACATAATTGTTAtgtaaaaagttttattgttgtGCATTTCTAATATTGTTGCTATTTTTATCAGAAGATTGTACATTTATACTGAAtaaagttggtgattcattccactgtggcgacacttgaatgaatgaatgaataatattgaataaaaagtaaattgTCA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000168061

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019117 lncRNA downstream 209840 3754566 ~ 3760957 (-) True XLOC_008957
TCONS_00019116 lncRNA downstream 808338 3160438 ~ 3162459 (-) True XLOC_008952
TCONS_00019115 lncRNA downstream 854535 3115337 ~ 3116262 (-) True XLOC_008951
TCONS_00017662 lncRNA downstream 1039776 2918257 ~ 2931021 (-) True XLOC_008946
TCONS_00019114 lncRNA downstream 1154655 2813516 ~ 2816142 (-) True XLOC_008942
TCONS_00019118 lncRNA upstream 187543 4163578 ~ 4174873 (-) True XLOC_008970
TCONS_00017697 lncRNA upstream 446446 4422481 ~ 4436431 (-) False XLOC_008974
TCONS_00017701 lncRNA upstream 452983 4429018 ~ 4445598 (-) False XLOC_008974
TCONS_00017703 lncRNA upstream 469025 4445060 ~ 4485867 (-) True XLOC_008974
TCONS_00018810 lncRNA upstream 1226216 5202251 ~ 5203167 (-) True XLOC_008986
TCONS_00017678 mRNA downstream 7148 3957876 ~ 3963649 (-) False XLOC_008960
TCONS_00017679 mRNA downstream 7148 3961409 ~ 3963649 (-) True XLOC_008960
TCONS_00017677 mRNA downstream 13891 3947696 ~ 3956906 (-) True XLOC_008959
TCONS_00017676 mRNA downstream 30126 3926095 ~ 3940671 (-) True XLOC_008958
TCONS_00017674 mRNA downstream 234024 3656212 ~ 3736773 (-) False XLOC_008956
TCONS_00017681 mRNA upstream 33537 4009572 ~ 4011013 (-) True XLOC_008962
TCONS_00017682 mRNA upstream 42327 4018362 ~ 4023182 (-) False XLOC_008963
TCONS_00017683 mRNA upstream 42327 4018362 ~ 4027367 (-) True XLOC_008963
TCONS_00017684 mRNA upstream 60674 4036709 ~ 4037626 (-) True XLOC_008964
TCONS_00017685 mRNA upstream 73187 4049222 ~ 4053149 (-) True XLOC_008965
TCONS_00017655 other downstream 1234299 2736383 ~ 2736498 (-) True XLOC_008940
TCONS_00017647 other downstream 1345134 2625028 ~ 2625663 (-) True XLOC_008933
TCONS_00017639 other downstream 1704714 2265969 ~ 2266083 (-) True XLOC_008927
TCONS_00017627 other downstream 2132914 1834971 ~ 1837883 (-) True XLOC_008922
TCONS_00017597 other downstream 2648891 1321790 ~ 1321906 (-) True XLOC_008910
TCONS_00017689 other upstream 128373 4104408 ~ 4104526 (-) True XLOC_008968
TCONS_00017694 other upstream 389123 4365158 ~ 4365272 (-) True XLOC_008973
TCONS_00017700 other upstream 450459 4426494 ~ 4482147 (-) False XLOC_008974
TCONS_00017702 other upstream 459430 4435465 ~ 4482230 (-) False XLOC_008974
TCONS_00017735 other upstream 1407027 5383062 ~ 5383180 (-) True XLOC_008997

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000092_01110360_01113717.mRNA True 2723 mRNA 0.34 2 CI01000092 1110279 ~ 1115228 (-)