RNA id: TCONS_00017682


Basic Information

Item Value
RNA id TCONS_00017682
length 4356
RNA type mRNA
GC content 0.42
exon number 2
gene id XLOC_008963
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 4018362 ~ 4027367 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGGTTTGTCTGACATGAAAGAAAAATCTACATTTTGTAAGTGAGCTTTGGTTGAGTTTACTGTTTAAGtgtttaaataagtttttttttttgttgttgttatttttatgtagatGGGGTTTCAAGTGTCTGCAGCTACCACAACCACAAGTTATACCCTTAACCCAAACATGACGAACACAACAGAAGCTCTTTGTGAAGTCCCAGCAAATGAAGTTTTCATATTTGCATACTCGCTTGTGTTTCTCGTCAGTCTGGTTCTGAACTGCTTTCCATTGGCCGTGCATTTCTGCTCAGATCAGCGTGTCCAGTCCAGCATCACAGTCTACATGAATAACCTCATTGCAGCTGACTTCTTCCTTTGCCTTTCCTTACTTTTGCGGATTGCATCCTATGCCGACTCTACAATAATGATGTTTAATATTTACTGCAGCTTTGGAGCAACAGCCTTTTACATCAACATGTATGCAAGCATTCTCTTCATGGAATTCATAGCAATAAACAGGTACCTGAAGATTGTCCGGCCATTGGAGACTCATACTCTGCAGACAGTTCGTACTGCCCGCTACATTTCTGGAGCTATTTGGTTCGTCTTGTTAGCTATATCATCTATTTATGTGATCCTCTATCTCAGCACCTCCTGGTCTAAAACAAAGCCTGAGGTGTTTATCTGTGATTTCCAGGACAGTTCCCAGATCAGTGCGGCATACACCTCTGTCCATTCTGCAAgctttgtcattttcatttttattctggTCTCTCTGATTTTTTTATACTGGAAGACTCTTCAAAAGCTCAGGGAAGTTCAGTTGTCTACACAGGCTGAATTCAACAGGCAAAAATTCAGAAAATCTAAGCAAAACATGCTAGTGCTAGTGGTCATTTTCTGCGTGTGCTTTGTGCCCTATCACCTAGTAAGACTACCCTACATATTCATCAGACACTTACTGAATGACTGTACATCAATTCAAGCATTGCACATCCTAAAAGAGGTGACAGCCCTGCTTGCAGCACTGAATGTCTCATTGGATCcacttatttactttttcttttgcAAGGCATTTAGAGACAAGGTTAACTTAATTAGTTGTCAAAACTGTCCATAAATAAGGGACATATTATTTAGGTATGTGTCTGTAATGTTGAGAGGAGATTGTTTTCGGACGAGTTCCCAAGCATTACCACTTCTTTGTCTCTGTTACGATCGCACTTCATTACAGGATTGAATAAATGAGTGTTGACTATGGCTTGACATTGACACCCACTTacccgccaaatgtgggtagattttaGCTGTGGTAAGTTAGGCAGCCATACTGGACTTGGGCCAAATATTCTGAGCATGAAGCCTTCATCTTAGACAACACGCCAACCAAGCTTATTCTTTAACCTCTTCATATAAGTGGGAACTCGTTAACTGCACTGTTCAAACTGAATGATCTACACTGCCTGATAGAGATATAAAGTGGGTTTCACAACTAACAAGTATTTCTGGATTAAATCACATTCTTCCACCCcatatctttaaatatgaacatttacttTGCCACAGTATTCTATAGGTTTCAGTGCATTATTGCAGCTCTTTAAGACACTTCCATGTAAATTTATGCTCATTTCATTTTATACTTGACCAACTTGAATAAAGGCTTATTTATAGTCTATTTCAAGGGCTGTTCTCTTATGTTGtgtcacaccagacgcggaacacgcgtcaatcgcgagtgatttacatgttgacatcctgcggcgcgatccGCGCAGAGCGAATAACGCGAATGGCGTGGTGCGAATAGCACGATACGAGCTAggtgaattgagcgttttgcgcgtttgacgcacttaacgagcgtttcgcgcaaatctctcgagttcgaaaatctgaacttcagcgggcATTCCCGCCGCataaaccaatcagaagcttgctcttgtgggggcgtgattgtgacgtagaacctgttgatggtgtcctgggggaaatcctccaggcgacaccgacaacaagtcatcaaactgggcttggctcagtcagaagcaccattgaaagcctccgtgatctaggttcagtttctggaggagtttatgagctcacagagctggatgcacctttgaaagcatgtagtggactcagacacggtcctaaacgtatcgacgctgtttttcagctgtcataaagtacataaacactcttattttcttcataaaatccctGTTAGCCtttttagcaatgaagctacagtcaccgggcagacagaagccctgcccaacacacaaatccgcgtctgttctgaagtgaatttgacgcgcgaatgaagcggatttaatgcgtgaatgaagcggggtttgatgcgcgtcccgcgtctggtgtgaacacagcattttaCCGACAGATAAATAAGATTTACCAGGGAGGAGCAAAATATGAAGCGATatcatttaagtgaagtttatgtataaacaaatttcaagaggatcacgtgcttatgattgctagcagctgacccgcattatctaattcactacgaccaatcagatgactcctaaactaccataaataccctggggttcattccattgctatcttcgttttgaagagtccccccttcctcccctactcctccttcttagacgggtgacacggtggcccagtgcgtagcactgtcgcctcacagcaagaatgtctctggttcctggctttaccaaaactagcagacatttctgtgtggagtttgcacttctccccgtgctcacgtgggtttcccccgggttccccggtttcctcccaccgcctaaaaacatgcaattaaatcaattgaacaatccaaattgtcaacatagacacgcttctagttagtaattaattttaagagcattcacttgctacagcaggggagttctcgagatctacctgcgCTCAAACTCCcttcccgccttgcaacgggagggagccctgggctcgaggatctcatgagctcagggctctctcccggcacagcatgccaaacaagcttttataattaatcatcagctaagtgtgaactcttgaaatatttttattattggacATTTGCATGGATTTGTTACACTTGTGGTGCTCCTTAATTTTAAAGTTAGCAACTGTGAgaccagtgctaaccactgagccaccttgataccccttaaagcaggggtggttcctggagggccacatgCACACAtatctgtaggtatcaaacaagaATAAAGCACTCAACTAGTTTGATCAGGtatgtttaattagagttggaactaaagtGTGCAGAGCGGCGGCTCTCAAGAAACtttgtttgacacctgtgccttaaagggatagtttacccaaagaGGAAAAAATGTACCAACCTTTATGTGATTCGAAACAAATGCTCAGTGGTTAGTCGCCTCCCAGCCAGATGGTCTGTGGTTCGAGTTTGGCTGGGCCAGGAGGTAGTTCTCTGTGGATGTTCTTGTGGTTACaatggtttcctccaggtgcttcagtttacACCACGGTTCAAAGACCTGTGTTAGAGGTGAATTGGAATATATTGGCTGTAGTTCAtgaatatgtgtgtaaatgagtttgTGGGTGTTGCCCAAAGCTGGGTTGCAGAGTAAttggtgtttttttcttctgtggtgacccctgataattcAGGGACTATGCCAAAGGATAGTGATTGAGCGAgtaagtgttcaacagaataaataatcTCACGCAGTTTTTTTGGAGAACTAACCTCTTAAGAACTGTACAAGTACATCATCCACACACAAAAATCTCTAACATGTCCATTTTCCCTCTTCAGAAGCTATTGTTACATGAATTTATTAATTTGGAGGTTTACATAAGGGTGACAGAGACATTCTTACAATCACTGGAAGCTGAAATAAAGATAAAGCTCAATTCTTCTAAACATGTCTTGTCATTGTACTGTATAATATTAGATGACAATGTTGCCCCCTGGTGGTTAGAGGACCCTACACATTTTATTTACTCAGTATACAATGATCAGCTTTGATGTTCCCACAGTTTAATGCCCTAAGCAACCTAGCGAGACAAAGTTCTTTTCATCATATGCAAACTGCATCTAACCTTTGTCAACAGATGTAGAGGAAATAGTCCTGAAACTATCAGGGAATGGGCTTCTGTTCTTGTATGGACATTTGtagttttgtaaatatatttacaaaatttgtagttttgtaaatatattcagtttttatttatctgtactttagataataataaaaaaaaatcattgtctACTTCATGTTTCTACTGTGTTGGCAGTAAACTTTGTTAAATGAGTTCTGTCTTGATtagacaaaacaaataaaatgattatacCAACA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000190195

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019117 lncRNA downstream 257405 3754566 ~ 3760957 (-) True XLOC_008957
TCONS_00019116 lncRNA downstream 855903 3160438 ~ 3162459 (-) True XLOC_008952
TCONS_00019115 lncRNA downstream 902100 3115337 ~ 3116262 (-) True XLOC_008951
TCONS_00017662 lncRNA downstream 1087341 2918257 ~ 2931021 (-) True XLOC_008946
TCONS_00019114 lncRNA downstream 1202220 2813516 ~ 2816142 (-) True XLOC_008942
TCONS_00019118 lncRNA upstream 140396 4163578 ~ 4174873 (-) True XLOC_008970
TCONS_00017697 lncRNA upstream 399299 4422481 ~ 4436431 (-) False XLOC_008974
TCONS_00017701 lncRNA upstream 405836 4429018 ~ 4445598 (-) False XLOC_008974
TCONS_00017703 lncRNA upstream 421878 4445060 ~ 4485867 (-) True XLOC_008974
TCONS_00018810 lncRNA upstream 1179069 5202251 ~ 5203167 (-) True XLOC_008986
TCONS_00017681 mRNA downstream 7349 4009572 ~ 4011013 (-) True XLOC_008962
TCONS_00017680 mRNA downstream 42327 3970797 ~ 3976035 (-) True XLOC_008961
TCONS_00017678 mRNA downstream 54713 3957876 ~ 3963649 (-) False XLOC_008960
TCONS_00017679 mRNA downstream 54713 3961409 ~ 3963649 (-) True XLOC_008960
TCONS_00017677 mRNA downstream 61456 3947696 ~ 3956906 (-) True XLOC_008959
TCONS_00017684 mRNA upstream 13527 4036709 ~ 4037626 (-) True XLOC_008964
TCONS_00017685 mRNA upstream 26040 4049222 ~ 4053149 (-) True XLOC_008965
TCONS_00017686 mRNA upstream 38818 4062000 ~ 4067158 (-) True XLOC_008966
TCONS_00017687 mRNA upstream 62441 4085623 ~ 4094888 (-) True XLOC_008967
TCONS_00017688 mRNA upstream 78072 4101254 ~ 4124099 (-) False XLOC_008968
TCONS_00017655 other downstream 1281864 2736383 ~ 2736498 (-) True XLOC_008940
TCONS_00017647 other downstream 1392699 2625028 ~ 2625663 (-) True XLOC_008933
TCONS_00017639 other downstream 1752279 2265969 ~ 2266083 (-) True XLOC_008927
TCONS_00017627 other downstream 2180479 1834971 ~ 1837883 (-) True XLOC_008922
TCONS_00017597 other downstream 2696456 1321790 ~ 1321906 (-) True XLOC_008910
TCONS_00017689 other upstream 81226 4104408 ~ 4104526 (-) True XLOC_008968
TCONS_00017694 other upstream 341976 4365158 ~ 4365272 (-) True XLOC_008973
TCONS_00017700 other upstream 403312 4426494 ~ 4482147 (-) False XLOC_008974
TCONS_00017702 other upstream 412283 4435465 ~ 4482230 (-) False XLOC_008974
TCONS_00017735 other upstream 1359880 5383062 ~ 5383180 (-) True XLOC_008997

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000092_01163367_01169844.mRNA True 1935 mRNA 0.38 2 CI01000092 1163308 ~ 1170769 (+)