RNA id: TCONS_00017687


Basic Information

Item Value
RNA id TCONS_00017687
length 2952
RNA type mRNA
GC content 0.38
exon number 6
gene id XLOC_008967
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 4085623 ~ 4094888 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGATTTATTTGTACACCATGACTGTTTTGGATTTTAGCCTTGTCAGCTGCTTGTGTGTGTCACATAAATGTGGGGAGGAAACACACAGCAGTATTTAAGCAGACACGGTTCCTCATCTTGGAATATTCAATCACTGCTGAAGAGTCTTCAGAGCATCACAGACAACACTTGCTATCTCTGACCACATATAATCCACTATTTTCCACTCTTCTTGAAAAGGATCTGCGCCGCAGAGATGTATATCAGCTCCAGGTGTGTGGGATTGACTCTGATCCCTACAGCGATCATCTCCATGCTTGCAAACTTGCTGCTGTTGTTTCCTGACATGAAGTATCGGTATCTGGCAAAGGGTCATGTGACTGCAGAGGCCTTGTGGTGTTCTGGCATCTGGGCATCTGGATTTCTGgtGCTTGTAGCTGCTCGAGGTTTTACAACACACTACGAAAAGACAGGATGCTGTTATTTTGCTGCCGAGGTTTTGCGTAAAATGGGCTACACATGTTTGGCTATTCTGGCTGCTGGCTTGTGCTTTTGGGTCAGCGGGACTGGTTTGGCACTGGGACCTTTATGTTTACATAACGGAACTCAAGGCCTAAAGTGGGAAAGACCATTAAAGCTAATCAAAACTGGACAGACGCTGTATCTGTATGAGCCAGAGCGATGGGCATCTGCCTGTGTGGAGCCACGAGGAGTCGTGATCTGGAATCTGCTGCTTTTCTCTGTTCTCATGGTCGCCAGTGGCCTTCAGCTCATCTCCTGTGTCCTGCATCTCTTCATCGCCTTTCTGGAGTTCATGTGTGGACCACACTTCTGCAAGAACAAGgtTGTTCCAGCTTGAAATGAAGTAATTGTCATCTGCATGTGAGAATGATGTTGTTCGGGTTAAACAGTCAACTATGACTGATTACTTTATTTTAACCAAAGAGGAAACATAAATGAGAAGTGTGTTAGGAGAGTCACTTCATGTCCTCGAATCTGGGGTTCCTGTGGCTCAGCTGGCTGATAATGATGGCAACACTCTACGTTTGAATCCCAGGGAACACTTGAACATCAGATTAAGCACTGTAAACAACAATGTGCCAAATGCACAAATAGAAATAagctgttttaaatatatttcaatgtGATATTTTATCCTTATGCactttaatatttatgtataagaatgtgtcatttaaattgatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatataacgtctGTGTgtcaaaatattgtttagttaATACTAATATGCTGTTTGTTAATGAAATgctgaatatttaacaatatttatcaAGATTAAAATCATGTATAAACAcatcattttgtaaataaatgtacagtagggatgggaagattcatAGATATGTATCGAttcgcggtcatgcgcgtgcacgatgcgagtgcatcggttgagcagcagaggatgaatgaaattttggaagcaaatcgagatgcatcgttttttgcgagatgcatcgatttttccgagatacagcttatatttttaatatagaatgtattttttatttattaacaagtgttgtcaacctgtttttggcgcataatttaatcgacctacataaagtaagccttagcaacggatttgcggatgtgtacacttacactacaactcagtgtatcaggtgtgcggatgaagctagtggagcgccctcagaaagcgtgagaagcaaaacaaacattttattcctcactgagttttaaatctaaagtatggcaacattatggatttaaggatggacgacatgacaggacagatgcaatttgcaaaatgtgccgcgcatctttaaaatacgcgggcagtacgactaatctgaaatctcacttgaagtggcgccacggtgttgttgtgaaagcatcttccagtgttcctgcatccccggctttcgcactgcttcaaccagctccaaaagtggtgagaaaagcattgcaagtttttttttccgtgcgcaacagttttgtgcgctctacgccaataacgaatgctattgcattgttcatctgcaaagatattcagcctagtgtcacggagaacgaaggttttaaacacctcctcctgttaatttttatttaattataataataataatattaataataataatgataaatataatgggtgtcacggtggcacagtgggtagtttgaccacctcacagcaagaagattgctggtttgttatatttttattagcctgttgtttacagtgacagtgatgtttcaaagcagcataacactgctagttcacgaccttaagttttgaataatcagtggcaaaatatctttgtaaaacttgttttcatagttgaaaagttaaatcccaattcttgttgtgcaatgctcaacctttatgttgaaagagtgcaaatatatatatatttttaatatatattgcacttatacattctgtttatcttgaaaatacttaaataatatgtgctatatgttctaaaatggccctctactgtaaactgacactctggctctgagagaagagccagtttgtaaaaaaagtcttggttttgcttggtttataaataatcaaactcattcaatggcacagcatcctctttcacatcatctcataaacttgatctaattagttagtgctgaaatatcgcatcgtatcgtgatatgggtgtgaatcgtatcgtgttgcatcgcaatatgtcacaaatgtatcgctaatatatcggatcgtattctttgtatcgagatgcgtatcggatcggcattatagcttagatgcccaaccctaatgtaCAGTACTATTTActgaattgcatttatttttatttaattatatacaagCAACACACTGTTGcactttattcattaattcattcaatttcttttcagcttagtccctttattaatctggggtcgcc

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000166307

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019117 lncRNA downstream 324666 3754566 ~ 3760957 (-) True XLOC_008957
TCONS_00019116 lncRNA downstream 923164 3160438 ~ 3162459 (-) True XLOC_008952
TCONS_00019115 lncRNA downstream 969361 3115337 ~ 3116262 (-) True XLOC_008951
TCONS_00017662 lncRNA downstream 1154602 2918257 ~ 2931021 (-) True XLOC_008946
TCONS_00019114 lncRNA downstream 1269481 2813516 ~ 2816142 (-) True XLOC_008942
TCONS_00019118 lncRNA upstream 68690 4163578 ~ 4174873 (-) True XLOC_008970
TCONS_00017697 lncRNA upstream 327593 4422481 ~ 4436431 (-) False XLOC_008974
TCONS_00017701 lncRNA upstream 334130 4429018 ~ 4445598 (-) False XLOC_008974
TCONS_00017703 lncRNA upstream 350172 4445060 ~ 4485867 (-) True XLOC_008974
TCONS_00018810 lncRNA upstream 1107363 5202251 ~ 5203167 (-) True XLOC_008986
TCONS_00017686 mRNA downstream 18465 4062000 ~ 4067158 (-) True XLOC_008966
TCONS_00017685 mRNA downstream 32474 4049222 ~ 4053149 (-) True XLOC_008965
TCONS_00017684 mRNA downstream 47997 4036709 ~ 4037626 (-) True XLOC_008964
TCONS_00017683 mRNA downstream 58256 4018362 ~ 4027367 (-) True XLOC_008963
TCONS_00017682 mRNA downstream 62441 4018362 ~ 4023182 (-) False XLOC_008963
TCONS_00017688 mRNA upstream 6366 4101254 ~ 4124099 (-) False XLOC_008968
TCONS_00017690 mRNA upstream 33672 4128560 ~ 4152582 (-) True XLOC_008969
TCONS_00017691 mRNA upstream 77400 4172288 ~ 4314097 (-) False XLOC_008971
TCONS_00017692 mRNA upstream 218191 4313079 ~ 4314042 (-) True XLOC_008971
TCONS_00017693 mRNA upstream 258273 4353161 ~ 4415917 (-) True XLOC_008972
TCONS_00017655 other downstream 1349125 2736383 ~ 2736498 (-) True XLOC_008940
TCONS_00017647 other downstream 1459960 2625028 ~ 2625663 (-) True XLOC_008933
TCONS_00017639 other downstream 1819540 2265969 ~ 2266083 (-) True XLOC_008927
TCONS_00017627 other downstream 2247740 1834971 ~ 1837883 (-) True XLOC_008922
TCONS_00017597 other downstream 2763717 1321790 ~ 1321906 (-) True XLOC_008910
TCONS_00017689 other upstream 9520 4104408 ~ 4104526 (-) True XLOC_008968
TCONS_00017694 other upstream 270270 4365158 ~ 4365272 (-) True XLOC_008973
TCONS_00017700 other upstream 331606 4426494 ~ 4482147 (-) False XLOC_008974
TCONS_00017702 other upstream 340577 4435465 ~ 4482230 (-) False XLOC_008974
TCONS_00017735 other upstream 1288174 5383062 ~ 5383180 (-) True XLOC_008997

Expression Profile

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