RNA id: TCONS_00017690


Basic Information

Item Value
RNA id TCONS_00017690
length 2652
RNA type mRNA
GC content 0.46
exon number 23
gene id XLOC_008969
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 4128560 ~ 4152582 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGATGAAAAAGAAGAAGAGTTTAGTGGAGGACAGCGCCACCCTCATCGCCCTCTCAGACCACCCTGAACAAACCTACGGCAGCATAGAGAAATGTGCGAAACCTCAGGAAAACAAGAACGTCTTCAGTGATGGAGTCACAACAATTGATTTCGTCTTGGTTTGGGAGGAATCTGGCAGCCCGTTGAAGTCAGCAGATGGAGACGAACTATCATTTAGTTCGTCACGGGACACACACAGGAAGTGGAGGACAGAGTTCCTGTCCAAACTCCAAGAAGCTGGACTTCATCAAGAAATGAAAGAGGTTGTGCAGGGAAAAACAAAGACTACTTATGTCCTTCTGAGCGCCCCATGGAATGTTCTGTGTTACTATGCTGAGGAGATCAGCCTTCGAGTGCCATTACagGTTGTGACCACTCCAATATCAAACTGGTCAGAGACCATCCTAGAAAAACTCCACATACCAAACATAATGGCACAAGATGTGCCCAACTATCCACCAGACTACTACACCTGCCCGTTCCGCACCACTAAACTAGAAAGATTTCTTGGTCATGAAAACAAGGACACTTTTTTCAAAACCACACAGAGACACCAAATActatATGAGATTTTAGCCAGGACTCCATATGGAGCGCTGAAGAGAGGAGAAGTTGGCATTGGCAGGCTTGTTAGTGAGAAAGTTCTCACCGCTGCTTTCCCCTTACATGAGGGTCCATTTCAGCTGCCAAAGACCCAAGAAGATCCACAATGTCTGAACATGAGGCAGATCCTCCATCACTACTGGGCTCGCTGGGCTTGCTGGAGGAAGTACCAACCACTGGATCACATCCGTGAATACTTTGGAGAGAAAATAGCACTATATTTTGCATGGCTAGGTTTCTACACTGGTTGGTTATTACCAGCAGCAGTAGTGGGTTTTATTATATTTCTGTTTGGTATCTGGCTGATGGTCACTGATGTGCCAGCGGAAGAGTTGTGCTCCAGTGGAAATGCCTTCATCATGTGTCCACTATGCAACATCTGCAGCCACTGGAACCTCTCGAGTATCTGCTATACTTATAAGGCAGGCTTGCTATTTGACAATGGAGGAACTGTGTTCTTCAGTATATTCATGTCTCTGTGGGCCGTCACTTTCCTGGAGTACTGGAAGCGGACAAGTTCTATACTTTCACACCGATGGGACTGCTCCGAATTCGAAGAAATAGAGGAAAGGCCAAGACCAGAATTCACAGCACTGGCACCTATGACAGTTCGTAATCCTGTGACTGGGGCTGAGGAGCCTTATTTCCCAGAGGCCCGTCGACTGAGTCGTACTCTAACCGGCAACATGGTCATCATTCTAATGATTTCCATAGTTTTGATATTCCTGATGGCCATCATACTGTATCGGACCATACTAAGCATCATTATCTACAGATCTCAGAGTGCCTTCTTCATATTTTCAGCTGGAAGAATAGCTAGCCTCACTGGTTCAATGCTAAATTTACTGGTTATCCTGTTGTTGTCGCGGCTTTATACTTACCTGGCTCAGTGTTTAACAAGATGGGAAATGCACCGCACCCAGACGGAATATGAGAATGCATTCATCCTCAAGGTCTTCATCTTCCAGTTTGTCAACTTCTACTCATCTCCTGTTTACATTGCGTTTTTCAAGGGCAGGTTTGTTGGATACCCTGGAAGCTATAACACATTGCTAGGAATCCGAAATGAGGATTGTGGTGCATCTGGATGTCTCATTGAGCTTGCACAAGAGTTGTTGGTAATCATGGTAGGCAAGCAAGTCATCAGCAACATCCAGGAATTTGTATTACCtaaattaaaaacatggtGGCACAAGAGGAAGTTAAAGCCAGCTCGCAGTCAGGAGGTCATAGATGAACCAGACACCAATTCACAGATCAACCCATGGGAAAATGACTATCAGTTGCTGGTGTGTGAGGGACTATTTGATGAGTATCTGGAAATGGTTCTGCAGTTTGGCTTTATTACCATCTTTGTAGCAGCCTGTCCCTTGGCTCCATTGTTTGCTTTGATAAATAACTGGGTAGAAGTCCGTCTGGATGCCCAGAAGTTTGTGTGTGAGTACCGCAGGCCAGTTGTGGAAAGAGCACAAGACATTGGCATCTGGCTGACCATCCTGCAGTTCATCTCTTATCTGGCTGTCATCAGTAATGCTTTCCTGATTGCCTTCACTTCGGATTTCCTGCCGCGTCTCTTTTACCGCTACACCGCGGGCAGCATGAGCGGATACATCAACTTCACACTCTCAGTCGCCCCAGCAAACTTCACCCAGAATGAGATGTCATGCAGatATCGAGGGCTCAGGGATGAGAAAGGACAGAACACACAGGATTACTACCATCTGCTGGCCATACGACTGAGCTTCGTCATTATATTCGAGCATGTTGTACTTCTGATTGGACGTATTATTGACTGGATTGTGCCTGATATTCCAGAAGAGGTGGAAATTAAGATTAAACGAGAACATTACATGGCCAAAGAGGCACTGGCTGAGAATCAGTCGTTGAGTAAATCTGTCCTGGAAGAGATGGGGAGGCAAAACTTTGAGCTGCGGCAAAGGATAAGAACACAGAGTCCAACAAACAACATGTCACCAACATCTGAAGATGAGGCCATGCCTGCGCTCTGA

Function

GO: NA

KEGG:

id description
ko04040 Ion channels

Ensembl:

ensembl_id ENSDART00000171942

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019117 lncRNA downstream 367603 3754566 ~ 3760957 (-) True XLOC_008957
TCONS_00019116 lncRNA downstream 966101 3160438 ~ 3162459 (-) True XLOC_008952
TCONS_00019115 lncRNA downstream 1012298 3115337 ~ 3116262 (-) True XLOC_008951
TCONS_00017662 lncRNA downstream 1197539 2918257 ~ 2931021 (-) True XLOC_008946
TCONS_00019114 lncRNA downstream 1312418 2813516 ~ 2816142 (-) True XLOC_008942
TCONS_00019118 lncRNA upstream 10996 4163578 ~ 4174873 (-) True XLOC_008970
TCONS_00017697 lncRNA upstream 269899 4422481 ~ 4436431 (-) False XLOC_008974
TCONS_00017701 lncRNA upstream 276436 4429018 ~ 4445598 (-) False XLOC_008974
TCONS_00017703 lncRNA upstream 292478 4445060 ~ 4485867 (-) True XLOC_008974
TCONS_00018810 lncRNA upstream 1049669 5202251 ~ 5203167 (-) True XLOC_008986
TCONS_00017688 mRNA downstream 4461 4101254 ~ 4124099 (-) False XLOC_008968
TCONS_00017687 mRNA downstream 33672 4085623 ~ 4094888 (-) True XLOC_008967
TCONS_00017686 mRNA downstream 61402 4062000 ~ 4067158 (-) True XLOC_008966
TCONS_00017685 mRNA downstream 75411 4049222 ~ 4053149 (-) True XLOC_008965
TCONS_00017684 mRNA downstream 90934 4036709 ~ 4037626 (-) True XLOC_008964
TCONS_00017691 mRNA upstream 19706 4172288 ~ 4314097 (-) False XLOC_008971
TCONS_00017692 mRNA upstream 160497 4313079 ~ 4314042 (-) True XLOC_008971
TCONS_00017693 mRNA upstream 200579 4353161 ~ 4415917 (-) True XLOC_008972
TCONS_00017695 mRNA upstream 269215 4421797 ~ 4528387 (-) False XLOC_008974
TCONS_00017696 mRNA upstream 269216 4421798 ~ 4528387 (-) False XLOC_008974
TCONS_00017689 other downstream 24034 4104408 ~ 4104526 (-) True XLOC_008968
TCONS_00017655 other downstream 1392062 2736383 ~ 2736498 (-) True XLOC_008940
TCONS_00017647 other downstream 1502897 2625028 ~ 2625663 (-) True XLOC_008933
TCONS_00017639 other downstream 1862477 2265969 ~ 2266083 (-) True XLOC_008927
TCONS_00017627 other downstream 2290677 1834971 ~ 1837883 (-) True XLOC_008922
TCONS_00017694 other upstream 212576 4365158 ~ 4365272 (-) True XLOC_008973
TCONS_00017700 other upstream 273912 4426494 ~ 4482147 (-) False XLOC_008974
TCONS_00017702 other upstream 282883 4435465 ~ 4482230 (-) False XLOC_008974
TCONS_00017735 other upstream 1230480 5383062 ~ 5383180 (-) True XLOC_008997
TCONS_00017752 other upstream 1636756 5789338 ~ 5795415 (-) False XLOC_009005

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000092_01317932_01336911.mRNA True 4442 mRNA 0.42 23 CI01000092 1317774 ~ 1338546 (-)