RNA id: TCONS_00017692


Basic Information

Item Value
RNA id TCONS_00017692
length 840
RNA type mRNA
GC content 0.46
exon number 2
gene id XLOC_008971
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 4172288 ~ 4314097 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGCAGAGGACGTGCTGGTCGTTGGCGTAGGCACAGCAGCCCATCATGCGCGCCGTCTTCTGAAAACGCTCAGCGGCGCGAGGGATGGCTTAGTCGCGTGCGGAGCGCCGATGCTGCACGATGAGTGTAGCGCTGCAAGATTTACGAAATAACGTGAGTCGCACTGATGCTTTTTATTACACCAGAAACATCTGCTAGACATCTCGCTGGCTGACAGAACCTGCTTTGAATCCATTCCTAGCACGTAAAAGGGCAATTTCTGCACATTTGGAGATGTTCGTgcgtttgtttatgttttgtttctgTATAATGTTTACTCTTCTGTTGCGCAATGACTGACGTGTGACGGGAAAAACTCACGACTGAGCAGTGTTGTGTCGCGTTTTTATTTAACACCTCTTTACATTATTTACAGCTGGAATTCAGCATCTTTTATAGCAAAACAAAGAGTTTATATCGAGGTGAAAGACAAACTGTTTAACGTTACCGCGCGTGGGTTCCCAGAAACCATCAAGCAGTTGACACGAACACGACAAACCGAACTCGTTGGTTTTTCTGGAATAGCGCAGATTCCTTTCTGTTAAATTTACAACCCGTGACGAACTGGTTTTTTATTATTCGTTTCTCTTTGTTCGAGGCTTGCTGGTTTGTTTACAGGGAGTGGCTACGAGAGAGCGTCTTGAGTTGCACAACGCTTTATAGACTGGCGTACGTTACCCATGGCAACTGGAGCGCCGGGGGGTCGCGCGAGGATAGTTTGTACTGTAACAGGTATACAGTGAACAACATAAATGAGCGCTCCTCATttagaaaatgaacatttttatccatttctcagtga

Function

GO:

id name namespace
GO:0070285 pigment cell development biological_process
GO:0006508 proteolysis biological_process
GO:0030318 melanocyte differentiation biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004222 metalloendopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008237 metallopeptidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-131120-140 Predicted to enable metalloendopeptidase activity. Acts upstream of or within melanocyte differentiation and pigment cell development. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in liver. Orthologous to human ECE2 (endothelin converting enzyme 2).

Ensembl:

ensembl_id ENSDART00000173311

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019118 lncRNA downstream 138206 4163578 ~ 4174873 (-) True XLOC_008970
TCONS_00019117 lncRNA downstream 552122 3754566 ~ 3760957 (-) True XLOC_008957
TCONS_00019116 lncRNA downstream 1150620 3160438 ~ 3162459 (-) True XLOC_008952
TCONS_00019115 lncRNA downstream 1196817 3115337 ~ 3116262 (-) True XLOC_008951
TCONS_00017662 lncRNA downstream 1382058 2918257 ~ 2931021 (-) True XLOC_008946
TCONS_00017697 lncRNA upstream 108439 4422481 ~ 4436431 (-) False XLOC_008974
TCONS_00017701 lncRNA upstream 114976 4429018 ~ 4445598 (-) False XLOC_008974
TCONS_00017703 lncRNA upstream 131018 4445060 ~ 4485867 (-) True XLOC_008974
TCONS_00018810 lncRNA upstream 888209 5202251 ~ 5203167 (-) True XLOC_008986
TCONS_00018811 lncRNA upstream 901766 5215808 ~ 5217706 (-) True XLOC_008989
TCONS_00017690 mRNA downstream 160497 4128560 ~ 4152582 (-) True XLOC_008969
TCONS_00017688 mRNA downstream 188980 4101254 ~ 4124099 (-) False XLOC_008968
TCONS_00017687 mRNA downstream 218191 4085623 ~ 4094888 (-) True XLOC_008967
TCONS_00017686 mRNA downstream 245921 4062000 ~ 4067158 (-) True XLOC_008966
TCONS_00017685 mRNA downstream 259930 4049222 ~ 4053149 (-) True XLOC_008965
TCONS_00017693 mRNA upstream 39119 4353161 ~ 4415917 (-) True XLOC_008972
TCONS_00017695 mRNA upstream 107755 4421797 ~ 4528387 (-) False XLOC_008974
TCONS_00017696 mRNA upstream 107756 4421798 ~ 4528387 (-) False XLOC_008974
TCONS_00017698 mRNA upstream 112081 4426123 ~ 4528326 (-) False XLOC_008974
TCONS_00017699 mRNA upstream 112349 4426391 ~ 4485828 (-) False XLOC_008974
TCONS_00017689 other downstream 208553 4104408 ~ 4104526 (-) True XLOC_008968
TCONS_00017655 other downstream 1576581 2736383 ~ 2736498 (-) True XLOC_008940
TCONS_00017647 other downstream 1687416 2625028 ~ 2625663 (-) True XLOC_008933
TCONS_00017639 other downstream 2046996 2265969 ~ 2266083 (-) True XLOC_008927
TCONS_00017627 other downstream 2475196 1834971 ~ 1837883 (-) True XLOC_008922
TCONS_00017694 other upstream 51116 4365158 ~ 4365272 (-) True XLOC_008973
TCONS_00017700 other upstream 112452 4426494 ~ 4482147 (-) False XLOC_008974
TCONS_00017702 other upstream 121423 4435465 ~ 4482230 (-) False XLOC_008974
TCONS_00017735 other upstream 1069020 5383062 ~ 5383180 (-) True XLOC_008997
TCONS_00017752 other upstream 1475296 5789338 ~ 5795415 (-) False XLOC_009005

Expression Profile

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