Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00017693 |
| length | 1874 |
| RNA type | mRNA |
| GC content | 0.47 |
| exon number | 7 |
| gene id | XLOC_008972 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007126.7 |
| NCBI id | CM002899.2 |
| chromosome length | 48040578 |
| location | 4353161 ~ 4415917 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006883 | cellular sodium ion homeostasis | biological_process |
| GO:0036376 | sodium ion export across plasma membrane | biological_process |
| GO:0030007 | cellular potassium ion homeostasis | biological_process |
| GO:0006811 | ion transport | biological_process |
| GO:0006813 | potassium ion transport | biological_process |
| GO:0006814 | sodium ion transport | biological_process |
| GO:1990573 | potassium ion import across plasma membrane | biological_process |
| GO:0005890 | sodium | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0005391 | sodium | molecular_function |
| GO:0001671 | ATPase activator activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-001127-1 | Predicted to enable ATPase activator activity. Predicted to be involved in cellular monovalent inorganic cation homeostasis and inorganic cation transmembrane transport. Predicted to act upstream of or within potassium ion transport and sodium ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of sodium:potassium-exchanging ATPase complex. Is expressed in several structures, including musculature system; nervous system; neural tube; otic vesicle; and polster. Orthologous to human ATP1B3 (ATPase Na+/K+ transporting subunit beta 3). |
| ensembl_id | ENSDART00000062874 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00019118 | lncRNA | downstream | 178288 | 4163578 ~ 4174873 (-) | True | XLOC_008970 |
| TCONS_00019117 | lncRNA | downstream | 592204 | 3754566 ~ 3760957 (-) | True | XLOC_008957 |
| TCONS_00019116 | lncRNA | downstream | 1190702 | 3160438 ~ 3162459 (-) | True | XLOC_008952 |
| TCONS_00019115 | lncRNA | downstream | 1236899 | 3115337 ~ 3116262 (-) | True | XLOC_008951 |
| TCONS_00017662 | lncRNA | downstream | 1422140 | 2918257 ~ 2931021 (-) | True | XLOC_008946 |
| TCONS_00017697 | lncRNA | upstream | 6564 | 4422481 ~ 4436431 (-) | False | XLOC_008974 |
| TCONS_00017701 | lncRNA | upstream | 13101 | 4429018 ~ 4445598 (-) | False | XLOC_008974 |
| TCONS_00017703 | lncRNA | upstream | 29143 | 4445060 ~ 4485867 (-) | True | XLOC_008974 |
| TCONS_00018810 | lncRNA | upstream | 786334 | 5202251 ~ 5203167 (-) | True | XLOC_008986 |
| TCONS_00018811 | lncRNA | upstream | 799891 | 5215808 ~ 5217706 (-) | True | XLOC_008989 |
| TCONS_00017691 | mRNA | downstream | 39064 | 4172288 ~ 4314097 (-) | False | XLOC_008971 |
| TCONS_00017692 | mRNA | downstream | 39119 | 4313079 ~ 4314042 (-) | True | XLOC_008971 |
| TCONS_00017690 | mRNA | downstream | 200579 | 4128560 ~ 4152582 (-) | True | XLOC_008969 |
| TCONS_00017688 | mRNA | downstream | 229062 | 4101254 ~ 4124099 (-) | False | XLOC_008968 |
| TCONS_00017687 | mRNA | downstream | 258273 | 4085623 ~ 4094888 (-) | True | XLOC_008967 |
| TCONS_00017695 | mRNA | upstream | 5880 | 4421797 ~ 4528387 (-) | False | XLOC_008974 |
| TCONS_00017696 | mRNA | upstream | 5881 | 4421798 ~ 4528387 (-) | False | XLOC_008974 |
| TCONS_00017698 | mRNA | upstream | 10206 | 4426123 ~ 4528326 (-) | False | XLOC_008974 |
| TCONS_00017699 | mRNA | upstream | 10474 | 4426391 ~ 4485828 (-) | False | XLOC_008974 |
| TCONS_00017704 | mRNA | upstream | 133323 | 4549240 ~ 4580763 (-) | False | XLOC_008975 |
| TCONS_00017689 | other | downstream | 248635 | 4104408 ~ 4104526 (-) | True | XLOC_008968 |
| TCONS_00017655 | other | downstream | 1616663 | 2736383 ~ 2736498 (-) | True | XLOC_008940 |
| TCONS_00017647 | other | downstream | 1727498 | 2625028 ~ 2625663 (-) | True | XLOC_008933 |
| TCONS_00017639 | other | downstream | 2087078 | 2265969 ~ 2266083 (-) | True | XLOC_008927 |
| TCONS_00017627 | other | downstream | 2515278 | 1834971 ~ 1837883 (-) | True | XLOC_008922 |
| TCONS_00017700 | other | upstream | 10577 | 4426494 ~ 4482147 (-) | False | XLOC_008974 |
| TCONS_00017702 | other | upstream | 19548 | 4435465 ~ 4482230 (-) | False | XLOC_008974 |
| TCONS_00017735 | other | upstream | 967145 | 5383062 ~ 5383180 (-) | True | XLOC_008997 |
| TCONS_00017752 | other | upstream | 1373421 | 5789338 ~ 5795415 (-) | False | XLOC_009005 |
| TCONS_00017769 | other | upstream | 2511101 | 6927018 ~ 6946091 (-) | False | XLOC_009012 |
| species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
|---|---|---|---|---|---|---|---|---|
| grasscarp (Ctenopharyngodon idella) | CI01000092_01451469_01485752.mRNA | True | 825 | mRNA | 0.50 | 7 | CI01000092 | 1451469 ~ 1485752 (-) |
