RNA id: TCONS_00017708


Basic Information

Item Value
RNA id TCONS_00017708
length 2046
RNA type mRNA
GC content 0.46
exon number 7
gene id XLOC_008976
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 4585266 ~ 4616928 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAATCTCGCAGCCGTATATTTTGGGGTCCTTCAGCGTCAGACTGCTGCTTTCTCTGAACAGCATCTTCGGCAATGGCGGATTACGATAACTACGATGACCGGGATCGGGCGTACGGGAGCTTTGGCGGTGGAAGAGGacCCCGAGGTGGTGGTGGCCCAAGCGGACCCCGAAAGCAGAAGGAACTTCCCACAGAGCCTCCTTACACAGCGTACGTTGGCAACCTGCCCTTCAACACAGTGCAAGGAGACATAGATGCCATTTTCAGAGACCTCAGCGTCAGGAGCGTTCGACTAGTCCGAGACAAAGAGACAGACAAGTTCAAAGGTTTCTGTTATGTGGAGTTTGACGACTTGGAATCTCTGAAAGAGGCTTTGACATATGACGGTGCCCTGTTAGGAGATCGATCTTTGAGGGTGGACATCGCAGAGGGCCGAAGGCAAGAACGTGGCGGCGGAGGCTTTGGCTTCCGGAAAGACGACAGAGGCCGCGGTGGCTCCCGTGGGGCCCGAGGAGGGGGACGAGACTCCAGAGAAGACTTCGACCAGTCTGGAGGAGGTGCGGCGGGTGAAATGGagGAAAGAGCGCAGAGACCAAGGCTACAGCTGAAGCCACGTACAGTGGCAGGTCCCCTTAACCAAGTGGCCAACCCCAACTCGGCCATCTTTGGGGGTGCCAAACCCAGGGAGGAGAATTAATATCTGTGTCAGTGTGGCTGCATTATTCCGGAAGGCTATACTGGATCCTGGCTTTGATCACCATAAAATCTTTCAAAGACGTCTCCCAGCGGCACGCAGGCAGAGGCACGAGGTGCTGGTCTCCTCTCGAATCCAAACGAGCCCTCTTCCgattggcttttaaaaaaaaaaaaagcttgtggaGGTGGGTCTTCTAGAACGGGGCGGGGCATAGTCTTAACTCCGCCTCTGCCTGTTTTTGCTGACTCCTCCCACACGCCTCAGAGAACCCTAACTTGGAGGACAACTCCATTTCCAGGTTGATACCATTGTGTTTAAGGACTTCAAGATCTCTTTCCCTTTCCAAAGTATCTTTGTGTTTCGAATTTGTAGACGCGTGGGCATAAAAGCCGCCGTGTCATTTTATATTTTGCTCTTTAAATTTCTTTACtgtatttgaaaattaaaaaaaccgACAACAACGTTGAGCTTGATTCTTAATTAAACCATTTCAAAGTGAagagctttttattttatttttatttttgacttcTTGCTTTTGTCTTTATGAAAGATTTTTCGCAGCTTGACCAAATTTGGCTCATCCAGAGCTTTCAGGAACAATGTGCCACATCTATCTCACTCATTTAGAAGAGCACCGTTGCATGCATGATAGGTTTGGTTGGTGACACATGGGTCTACAGTCTACAGCAGCATCCACCTCTTGACGCCAATGCATTTCTTTACAGGAACAGTAGAAGCTATGGTCCATAACATCATGTTTACTGCCTTTCCAAGCTTATTGAACACAAATGAACTGCTCACACATGTCCAGACACACCAGGCGCTGTAGTTTCATCTCTAGTGGATCGAGTGTAGAGCCCTCATGGGGAAATCCATGCCGCAAAACCCTTCTCTTCACGATTTACTGGATCTAAATGAGGAAGCTCATTATTTTTTGGTTTTCTTACTGTACTATAGAGGTCggctgtttttattcattggTTTTTCATTTTCCTACACTGTTTACGGCAATAAATTGTATCATCTTACAGTGTTTGAAATGAATGTGTTGACATGGGATGATTTTATTCTGTGTCCTGTGATGCTATACGGTGTTTAACTCGTTTAAATGAAAGAAATGTTTCATCCAAATTCAACCTTTCGGTTGGTTTATCGCCGCAGCTTCAAGCTTTGGGGAATTGTCATTGAACTTCACCAACAAGGTAACCGAACTTATCAGTGCCACACAGCATTTTGGCTGAGTCAACAATGATCTATACACTGAAGCAAACACAGGAAGGTTTTGGAGACACGTGATGAGTGATTGTTTTGCATATGTGAAGAAGAATAAAAGATTTCAAGAGGAGA

Function

GO:

id name namespace
GO:0001731 formation of translation preinitiation complex biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0097010 eukaryotic translation initiation factor 4F complex assembly biological_process
GO:0043024 ribosomal small subunit binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0034057 RNA strand-exchange activity molecular_function
GO:0033592 RNA strand annealing activity molecular_function

KEGG:

id description
ko03019 Messenger RNA biogenesis
ko03012 Translation factors

ZFIN:

id description
ZDB-GENE-010328-19 Predicted to enable RNA strand annealing activity; RNA strand-exchange activity; and ribosomal small subunit binding activity. Predicted to be involved in eukaryotic translation initiation factor 4F complex assembly and formation of translation preinitiation complex. Predicted to be located in perinuclear region of cytoplasm. Human ortholog(s) of this gene implicated in Williams-Beuren syndrome. Orthologous to human EIF4H (eukaryotic translation initiation factor 4H).

Ensembl:

ensembl_id ENSDART00000161721

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00017703 lncRNA downstream 99534 4445060 ~ 4485867 (-) True XLOC_008974
TCONS_00017701 lncRNA downstream 139803 4429018 ~ 4445598 (-) False XLOC_008974
TCONS_00017697 lncRNA downstream 148970 4422481 ~ 4436431 (-) False XLOC_008974
TCONS_00019118 lncRNA downstream 410528 4163578 ~ 4174873 (-) True XLOC_008970
TCONS_00019117 lncRNA downstream 824444 3754566 ~ 3760957 (-) True XLOC_008957
TCONS_00018810 lncRNA upstream 585435 5202251 ~ 5203167 (-) True XLOC_008986
TCONS_00018811 lncRNA upstream 598992 5215808 ~ 5217706 (-) True XLOC_008989
TCONS_00017751 lncRNA upstream 1170370 5787186 ~ 5791331 (-) False XLOC_009005
TCONS_00017753 lncRNA upstream 1178147 5794963 ~ 5797918 (-) True XLOC_009005
TCONS_00017759 lncRNA upstream 1281594 5898410 ~ 5901485 (-) False XLOC_009008
TCONS_00017704 mRNA downstream 4638 4549240 ~ 4580763 (-) False XLOC_008975
TCONS_00017705 mRNA downstream 17247 4549241 ~ 4568154 (-) True XLOC_008975
TCONS_00017695 mRNA downstream 57014 4421797 ~ 4528387 (-) False XLOC_008974
TCONS_00017710 mRNA upstream 340968 4957784 ~ 4967302 (-) False XLOC_008977
TCONS_00017711 mRNA upstream 341025 4957841 ~ 4967490 (-) False XLOC_008977
TCONS_00017712 mRNA upstream 347955 4964771 ~ 4969525 (-) True XLOC_008977
TCONS_00017713 mRNA upstream 394264 5011080 ~ 5016039 (-) True XLOC_008978
TCONS_00017714 mRNA upstream 538321 5155137 ~ 5157572 (-) True XLOC_008979
TCONS_00017702 other downstream 103171 4435465 ~ 4482230 (-) False XLOC_008974
TCONS_00017700 other downstream 103254 4426494 ~ 4482147 (-) False XLOC_008974
TCONS_00017694 other downstream 220129 4365158 ~ 4365272 (-) True XLOC_008973
TCONS_00017689 other downstream 480875 4104408 ~ 4104526 (-) True XLOC_008968
TCONS_00017655 other downstream 1848903 2736383 ~ 2736498 (-) True XLOC_008940
TCONS_00017735 other upstream 766246 5383062 ~ 5383180 (-) True XLOC_008997
TCONS_00017752 other upstream 1172522 5789338 ~ 5795415 (-) False XLOC_009005
TCONS_00017769 other upstream 2310202 6927018 ~ 6946091 (-) False XLOC_009012
TCONS_00017770 other upstream 2322072 6938888 ~ 6940927 (-) True XLOC_009012
TCONS_00017772 other upstream 2331855 6948671 ~ 6966239 (-) False XLOC_009013

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00005461 False 4328 mRNA 0.51 9 CM030142.1 1708687 ~ 1723500 (-)