RNA id: TCONS_00017711


Basic Information

Item Value
RNA id TCONS_00017711
length 1075
RNA type mRNA
GC content 0.46
exon number 3
gene id XLOC_008977
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 4957784 ~ 4969525 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CATACTTATTAATACAGTTAATAATGTATCTAAACAAAGTGCTCTATATATTAGGCCTATAGACATTTTTCCTCAACACTATAAAAAAGACGCAGTTTAGTAGGTGTCGCACCAAACCGGTAGGTGGCAGTAATGCATCAGGTATTTCGCCTTCACCCTCACCCTCTGGAGTTAAAGCAGAGTAAGAGGTGTACTGGAGGCATGGCAGCGTACAGTAAGAAATGACAGTTCTTTTACTAATTTTTCGGGGTTTTGAGCGTTCAGCATcagtttatgtttatttttcctGTATTCGATGGATCTGTTGTTAAAGGTGGTGTCAAATCAGGAAATTACAGTTAGTAATTGCTTACTCATAAAATGCTTCAGCTGATGCTTTATAACCCCATCTAAAGACACAATGTCGGTCACAAAAGCAGCTGTCAAAGCGGTTCATCTAGGAAGGATCTCCTACCACAGTGCCTTGAAAATACAGCAGCAGCACATACAGCAGCATCTGGATTCATCCAGCAACATCCCAAACACGTTATTACTCTGCGAACACGAGCCGGTGTACACCATCGGTCTCAGACAGGCTCCGTACCCACCAGCAGAGGAGCAGAGACTGAAGGCTCTGGGTGCAGATTTCTGCCGCACCAACAGAGGAGGACTCATTACTTTCCACGGGCCGGGACAGCTGGTCTGTTACCCCATCCTCAACCTGGGCTGCTTCAAGAAGAGCGTGAGATGGTACGTGTGTGAACTGGAAAGGACCGTGATCAAGATGTGCGGTAAATTTGGGATTAAAGCCTCAACTTCTCCGGATACTGGAGTCTGGGTGGGAGACAACAAAATCTGCGCAATTGGCATCCATTGTGGAAGATACATCACCTCCCATGGTTTGGCTCTGAACTGCAACACAGACATGAGCTGGTTTGACAACATTGTGCCATGTGGGATTGTGGGAAAAGGTGTGACCTCACTGAGCCAAGAGCTGGAGCGGGATGTCCCCCCTGAAGAGGCCATACCCGAGCTACTAGAAGCCTTCACTGAACAATTTAACTGCACTTTGACTTATAATGGTAGCTTGAGTTGA

Function

GO:

id name namespace
GO:0009249 protein lipoylation biological_process
GO:0006464 cellular protein modification process biological_process
GO:2000376 positive regulation of oxygen metabolic process biological_process
GO:0005739 mitochondrion cellular_component
GO:0016415 octanoyltransferase activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0016746 transferase activity, transferring acyl groups molecular_function
GO:0102555 octanoyl transferase activity (acting on glycine-cleavage complex H protein) molecular_function
GO:0016874 ligase activity molecular_function
GO:0033819 lipoyl(octanoyl) transferase activity molecular_function

KEGG:

id description
ko00785 Lipoic acid metabolism

ZFIN:

id description
ZDB-GENE-060312-18 Predicted to enable ligase activity; lipoyl(octanoyl) transferase activity; and octanoyl transferase activity (acting on glycine-cleavage complex H protein). Predicted to be involved in positive regulation of oxygen metabolic process and protein lipoylation. Predicted to act upstream of or within cellular protein modification process. Predicted to be active in mitochondrion. Orthologous to human LIPT2 (lipoyl(octanoyl) transferase 2).

Ensembl:

ensembl_id ENSDART00000180551

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00017703 lncRNA downstream 471974 4445060 ~ 4485867 (-) True XLOC_008974
TCONS_00017701 lncRNA downstream 512243 4429018 ~ 4445598 (-) False XLOC_008974
TCONS_00017697 lncRNA downstream 521410 4422481 ~ 4436431 (-) False XLOC_008974
TCONS_00019118 lncRNA downstream 782968 4163578 ~ 4174873 (-) True XLOC_008970
TCONS_00019117 lncRNA downstream 1196884 3754566 ~ 3760957 (-) True XLOC_008957
TCONS_00018810 lncRNA upstream 234761 5202251 ~ 5203167 (-) True XLOC_008986
TCONS_00018811 lncRNA upstream 248318 5215808 ~ 5217706 (-) True XLOC_008989
TCONS_00017751 lncRNA upstream 819696 5787186 ~ 5791331 (-) False XLOC_009005
TCONS_00017753 lncRNA upstream 827473 5794963 ~ 5797918 (-) True XLOC_009005
TCONS_00017759 lncRNA upstream 930920 5898410 ~ 5901485 (-) False XLOC_009008
TCONS_00017706 mRNA downstream 340913 4585266 ~ 4616928 (-) False XLOC_008976
TCONS_00017708 mRNA downstream 341025 4585401 ~ 4616816 (-) False XLOC_008976
TCONS_00017707 mRNA downstream 341025 4585401 ~ 4616816 (-) False XLOC_008976
TCONS_00017709 mRNA downstream 361218 4586251 ~ 4596623 (-) True XLOC_008976
TCONS_00017704 mRNA downstream 377078 4549240 ~ 4580763 (-) False XLOC_008975
TCONS_00017713 mRNA upstream 43590 5011080 ~ 5016039 (-) True XLOC_008978
TCONS_00017714 mRNA upstream 187647 5155137 ~ 5157572 (-) True XLOC_008979
TCONS_00017715 mRNA upstream 194784 5162274 ~ 5165013 (-) True XLOC_008980
TCONS_00017716 mRNA upstream 200200 5167690 ~ 5172170 (-) True XLOC_008981
TCONS_00017717 mRNA upstream 208103 5175593 ~ 5178899 (-) True XLOC_008982
TCONS_00017702 other downstream 475611 4435465 ~ 4482230 (-) False XLOC_008974
TCONS_00017700 other downstream 475694 4426494 ~ 4482147 (-) False XLOC_008974
TCONS_00017694 other downstream 592569 4365158 ~ 4365272 (-) True XLOC_008973
TCONS_00017689 other downstream 853315 4104408 ~ 4104526 (-) True XLOC_008968
TCONS_00017655 other downstream 2221343 2736383 ~ 2736498 (-) True XLOC_008940
TCONS_00017735 other upstream 415572 5383062 ~ 5383180 (-) True XLOC_008997
TCONS_00017752 other upstream 821848 5789338 ~ 5795415 (-) False XLOC_009005
TCONS_00017769 other upstream 1959528 6927018 ~ 6946091 (-) False XLOC_009012
TCONS_00017770 other upstream 1971398 6938888 ~ 6940927 (-) True XLOC_009012
TCONS_00017772 other upstream 1981181 6948671 ~ 6966239 (-) False XLOC_009013

Expression Profile

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