RNA id: TCONS_00018810


Basic Information

Item Value
RNA id TCONS_00018810
length 917
lncRNA type sense_over
GC content 0.34
exon number 1
gene id XLOC_008986
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 5202054 ~ 5203371 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGATAATGGAACATACTTTTACTTCATGTTGTTTGAAAATCTTGGGTATATAAGATATGCTTTGTTCACTACAGGACTGATTCTGTactgtgttattatattatttaatgctgtcattattattactgtattttgtGGCCGTACATTACACCAGCCTATGTACATTCTGATTTCCTGCTTGTCTGTTAACTCTGTGTATGGAACAGCTGGCTTTTTTCCAAGAGTTCTGACTGACTTGTTGTCTGATACACACTTAATCTCCCGTGAAGCATGCGGCTTACAATCATTTGTCATTTACTCATACATAACAAATGAGAATACAATATTAATGCTAATGGCTCTTGACAGATTTGTTGCAATTAGTAAGCCTCTACAATATCACAACATAATTACTCCAAGGCTCCTGgctcttttatttcttttaaactgGGCATATTCAATGCTTTGTATTGGtgttattgctgtttttactTCAGGGCTGAAAATGTGTGGCAACAAACTATGGAAAGTGTACTGCCAAAACTATGAAGTTGTCAAGCTCTCTTGTGTAaatagcattattattaatatcatggGCTTGTATTTGCTGATAACAACTGTAATCATTCCTTTAAGTTTAATTATATATTCTTATGTGAAAATCCTAATCATTTGTCGAAGAAGTTCATCACAGTTCACAAGAAAATCTTTTCAAACGTGTGTTCCACACATAGTGGTGCTTATAAATGTTTCAGTTTCAGTCATATCTGAGATTACTTTGAGTCGAGTTGTCAATCTAAACATGTCTGTAGGGTTGTCAGTTTTTCTATCACTGGAGTTTCTTTTAATACCACCCATCCTCAATCCACTTGTTTATGGTTTAGGTTTGTCAGATATTCGCAGAAAAATATTTGCCTCAGCAAGGTATCCATGTAG

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0050896 response to stimulus biological_process
GO:0007608 sensory perception of smell biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0004984 olfactory receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00017703 lncRNA downstream 716384 4445060 ~ 4485867 (-) True XLOC_008974
TCONS_00017701 lncRNA downstream 756653 4429018 ~ 4445598 (-) False XLOC_008974
TCONS_00017697 lncRNA downstream 765820 4422481 ~ 4436431 (-) False XLOC_008974
TCONS_00019118 lncRNA downstream 1027378 4163578 ~ 4174873 (-) True XLOC_008970
TCONS_00019117 lncRNA downstream 1441294 3754566 ~ 3760957 (-) True XLOC_008957
TCONS_00018811 lncRNA upstream 12641 5215808 ~ 5217706 (-) True XLOC_008989
TCONS_00017751 lncRNA upstream 584019 5787186 ~ 5791331 (-) False XLOC_009005
TCONS_00017753 lncRNA upstream 591796 5794963 ~ 5797918 (-) True XLOC_009005
TCONS_00017759 lncRNA upstream 695243 5898410 ~ 5901485 (-) False XLOC_009008
TCONS_00019119 lncRNA upstream 695243 5898410 ~ 5901982 (-) False XLOC_009008
TCONS_00017720 mRNA downstream 4060 5196715 ~ 5198191 (-) True XLOC_008985
TCONS_00017719 mRNA downstream 10579 5189408 ~ 5191672 (-) True XLOC_008984
TCONS_00017718 mRNA downstream 18065 5182854 ~ 5184186 (-) True XLOC_008983
TCONS_00017717 mRNA downstream 23352 5175593 ~ 5178899 (-) True XLOC_008982
TCONS_00017716 mRNA downstream 30081 5167690 ~ 5172170 (-) True XLOC_008981
TCONS_00017722 mRNA upstream 2371 5205538 ~ 5207805 (-) True XLOC_008987
TCONS_00017723 mRNA upstream 7301 5210468 ~ 5212930 (-) True XLOC_008988
TCONS_00017724 mRNA upstream 12640 5215807 ~ 5217693 (-) False XLOC_008989
TCONS_00017725 mRNA upstream 17825 5220992 ~ 5222924 (-) False XLOC_008990
TCONS_00017726 mRNA upstream 18513 5221680 ~ 5222597 (-) True XLOC_008990
TCONS_00017702 other downstream 720021 4435465 ~ 4482230 (-) False XLOC_008974
TCONS_00017700 other downstream 720104 4426494 ~ 4482147 (-) False XLOC_008974
TCONS_00017694 other downstream 836979 4365158 ~ 4365272 (-) True XLOC_008973
TCONS_00017689 other downstream 1097725 4104408 ~ 4104526 (-) True XLOC_008968
TCONS_00017655 other downstream 2465753 2736383 ~ 2736498 (-) True XLOC_008940
TCONS_00017735 other upstream 179895 5383062 ~ 5383180 (-) True XLOC_008997
TCONS_00017752 other upstream 586171 5789338 ~ 5795415 (-) False XLOC_009005
TCONS_00017769 other upstream 1723851 6927018 ~ 6946091 (-) False XLOC_009012
TCONS_00017770 other upstream 1735721 6938888 ~ 6940927 (-) True XLOC_009012
TCONS_00017772 other upstream 1745504 6948671 ~ 6966239 (-) False XLOC_009013