RNA id: TCONS_00017722


Basic Information

Item Value
RNA id TCONS_00017722
length 2268
RNA type mRNA
GC content 0.34
exon number 1
gene id XLOC_008987
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 5205538 ~ 5207805 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACAGAAGAACTACTGTAATGTCTCTTAAATTCTTTGAAAATGCAGTGATTATCACTTAAATTACTGTattcataatgataataatggcTTTCTTAAgacaatattaatatatacaatataaactAAAGCTTAAAAGATCATATTTAAACTAAAGTATTGATTTATAAGGTGTTGAACTTTCTCTGCTCTCTTCCTCAGATCATTTGCTTGTGTGAAAATGGATAATGGAACATACTTTTACTTCATGTTGTTTGAAAATCTTGGGTATATAAGATATGCTTTGTTCACTTCAGGATTGATTCTGTACTGTGTTATCATACTATTCAATgctgtcattattattactatattttggAACCGCACTTTACACCAGCCTATGTACATTCTGATTTCCTGCTTGTCTGTTAACTCTGTGTATGGAACAGCTGGCTTTTTTCCAAGAGTTCTGACTGACTTGTTGTCTGATGCACACTCAATCTCTCGTGAAGCATGCGTCTTACAATCTATTGTAATTAACTCATACATAGCAAATGAGAATACAATCTTAATGCTAATGGCTCTTGACAGATTTGTTGCAATTAGTAAGCCTCTGCAATATCACAACATAATTACTCCAAGGTTCCTGgctcttttatttcttttaaactgGGCATATTCAATGTTTTGTTTCTGTGTTGTTGCAATTTTTTCTTCAGGGCTGAAAATGTGTGGCAACAAACTATGGAAAGTGTACTGCCACAACTATGAAGTTGTCAAGCTGTCTTGtgtaaacaacattattattaatataatgggCTTGTATGTGCTGGCAACAACTGTAATCATTCCTTTAAGTTTAATTATATATTCTTATGTGAAAATTCTAATCATTTGTCGAAGAAGTTCATCACAGTTCATGAGAAAATCTTTTCAAACGTGTGTTCCACACATAGTGGTGCTTTTAAATTTCTCAGTTTCTGTCGTATCTGAGATTACTTTGAGTCGAGTTGTCAATCTAAACATGTCTGTAGGGTTGTCAGTTTTTCTGTCACTGGAGTTTCTTTTAATACCACCCATCCTCAATCCACTTGTTTATGGGTTAAGTCTGTCAGATATTCGGAAGAAAAATATTTGCCTCAGAAATGTATGCAGGTAGATTATACAAGTTTTAGTTTGGCtgtaaaattaaatgcatttatactCTGGTTTTAGGTAAAAAACAAGCTTTATAACACCATGCTTTTCATACTATTTATGAATTTCAAGTTCGAACATTTTAATGTGTCAGAAATGTAAATGCTCTTTATCTTTATGTCACATTGAATTAATGTGTTAATAAGCATATTAAACTAATTTGCCACATACTGTTTGCTGGAATGCTCCACAGTCTGAAATATTGTTACAGCTTTTTAGTCTCTTGTCTTTGTCTATGTCTGCTTTGGCACAGTCtttattgtaaaaagcactatagaaataaagatgaattgaataaatcagttacaataaaaacataatgtgTTCTCTATTTACCAAACTCAAACCTACATTCAGTGTAGCCTATGTTGAGAATTAGAGATCATAATTATGCTTTAAATAGCTTTCTAAATAGTATTATAGCCTATATAATTTGCTCACCAAATATCGACACAGACTAAGCAACAAAAATATTACTTTCTTAGCTCAAATGTAGTTTTTCCCTCTAACATTTGCTCTGGCTGACACGTGACTCTACTTTTTCATATGTGGAATAAGGAATAAAATGAGTATATGTGAAAAGAATCAATTGATTTGTAACTATCCCTTAGTCTAGCACTTTCTGTTAGGATCctctttgtgttaaaaaaaaaatccttgttcAAGGGGAAACTGAAACTTTATCTTTAAAAGGCCTATAATACCAGAGTTGTCTGAGCATGCTTTTTATCTGTATGTTTAGAATGTCCTTTTCTTCGTTttatttttctcagtggcttgcactatcaccttacagcaagaaggttactagtATGAGTCCCAGcaggaggcatttctgtgtggagttaccCCTGGATTTTCTGGTTTACCCCTAAAGCCTGGTTTTTAcatctgcgtcgagtgatcggcgtgacctaCAGTGCAAGCCTTGCTcgttgccgtgcatttatacttctacatGCTGTATGTGTTCCTCTGTAATACCACTTCTGAAACGCTatctggcagtgaggtgtttcttcgctggtgttttctttttttcctgaatgcttccttaatgtacactCATAActtattaaaagaataagcacaata

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0050896 response to stimulus biological_process
GO:0007608 sensory perception of smell biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0004984 olfactory receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070806-111 Predicted to enable odorant binding activity and olfactory receptor activity. Predicted to be involved in detection of chemical stimulus involved in sensory perception of smell. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDART00000174046

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018810 lncRNA downstream 2371 5202251 ~ 5203167 (-) True XLOC_008986
TCONS_00017703 lncRNA downstream 719671 4445060 ~ 4485867 (-) True XLOC_008974
TCONS_00017701 lncRNA downstream 759940 4429018 ~ 4445598 (-) False XLOC_008974
TCONS_00017697 lncRNA downstream 769107 4422481 ~ 4436431 (-) False XLOC_008974
TCONS_00019118 lncRNA downstream 1030665 4163578 ~ 4174873 (-) True XLOC_008970
TCONS_00018811 lncRNA upstream 8003 5215808 ~ 5217706 (-) True XLOC_008989
TCONS_00017751 lncRNA upstream 579381 5787186 ~ 5791331 (-) False XLOC_009005
TCONS_00017753 lncRNA upstream 587158 5794963 ~ 5797918 (-) True XLOC_009005
TCONS_00017759 lncRNA upstream 690605 5898410 ~ 5901485 (-) False XLOC_009008
TCONS_00019119 lncRNA upstream 690605 5898410 ~ 5901982 (-) False XLOC_009008
TCONS_00017721 mRNA downstream 2167 5202054 ~ 5203371 (-) False XLOC_008986
TCONS_00017720 mRNA downstream 7347 5196715 ~ 5198191 (-) True XLOC_008985
TCONS_00017719 mRNA downstream 13866 5189408 ~ 5191672 (-) True XLOC_008984
TCONS_00017718 mRNA downstream 21352 5182854 ~ 5184186 (-) True XLOC_008983
TCONS_00017717 mRNA downstream 26639 5175593 ~ 5178899 (-) True XLOC_008982
TCONS_00017723 mRNA upstream 2663 5210468 ~ 5212930 (-) True XLOC_008988
TCONS_00017724 mRNA upstream 8002 5215807 ~ 5217693 (-) False XLOC_008989
TCONS_00017725 mRNA upstream 13187 5220992 ~ 5222924 (-) False XLOC_008990
TCONS_00017726 mRNA upstream 13875 5221680 ~ 5222597 (-) True XLOC_008990
TCONS_00017727 mRNA upstream 20775 5228580 ~ 5230423 (-) True XLOC_008991
TCONS_00017702 other downstream 723308 4435465 ~ 4482230 (-) False XLOC_008974
TCONS_00017700 other downstream 723391 4426494 ~ 4482147 (-) False XLOC_008974
TCONS_00017694 other downstream 840266 4365158 ~ 4365272 (-) True XLOC_008973
TCONS_00017689 other downstream 1101012 4104408 ~ 4104526 (-) True XLOC_008968
TCONS_00017655 other downstream 2469040 2736383 ~ 2736498 (-) True XLOC_008940
TCONS_00017735 other upstream 175257 5383062 ~ 5383180 (-) True XLOC_008997
TCONS_00017752 other upstream 581533 5789338 ~ 5795415 (-) False XLOC_009005
TCONS_00017769 other upstream 1719213 6927018 ~ 6946091 (-) False XLOC_009012
TCONS_00017770 other upstream 1731083 6938888 ~ 6940927 (-) True XLOC_009012
TCONS_00017772 other upstream 1740866 6948671 ~ 6966239 (-) False XLOC_009013