RNA id: TCONS_00017726


Basic Information

Item Value
RNA id TCONS_00017726
length 918
RNA type mRNA
GC content 0.35
exon number 1
gene id XLOC_008990
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 5220992 ~ 5222924 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGAAAACTATACCAGTTTTAACTTCATGTTGTTTGAAAATCTAGGGTACATAAGATATTCTCTCTTTGTTTTGGGTTTTGTTCTGTACTTTGCTATAATATTCTTTAATGTCCTTATTATGCTTGCGGTGTTTCTGGAAAGGACATTACACCAGCCTATGTACATTCTGATTTCATGCTTGTCTATGAACTCTCTATTTGGAACAGCTGGCTTTTTCCCAAGAGTTCTGTCAGACTTGCTGTCTGAAACACACTCAATCTCTCGTGAAGCATGCTTCTCCCAGTCTTTTGTCATCTTTACATATGTGGCAAATGAGTTCTCAATATTAATGTTAATGGCGTTTGACAGATTTGCTGCAATTTGTAAACCTTTACGTTACCACAGCATAGTTAGACCAAGGTTTCTTGCTTGTTTAATAGTTATAAATCtgaattgtataatgattttgCTATGTGTTGCTGCACTTTTAACTACCAAACTGAGAATGTGTGGTAACAAACTATTTAAGGTATACTGCCATAGCTATGAAGTACTCAAGCTTTCTTGTGACAACATTTTAATCAATAACGCTTTTGGCttgttattagtaataataactaCTATCATCCCTTTAGGTTTAATACTATTATCCTATGTAAAAATTCTTATCATTTGTCAGAGAAGCTCAGCACAGTTTAAAGGCAAAGCATATCAAACCTGTATTCCACACATAGTGATCCTTTTGAATTTCACAATTGCTGTAACATGTGACACCACTTTGAGTCGGGTTGTGAATTTACAAATTCCTGTAGGTCTGTCAGTTTTTCTTTCACTTGAGTTTCTCATTATACCACCTGTACTCAACCCCCTTATTTACGCCTTTAACCTGCCTGATATTCGCAAAAAAATGATCAGCCTTATAAAACCATTGAAATag

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0050896 response to stimulus biological_process
GO:0007608 sensory perception of smell biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0004984 olfactory receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070806-109 Predicted to enable odorant binding activity and olfactory receptor activity. Predicted to be involved in detection of chemical stimulus involved in sensory perception of smell. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDART00000123819

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018811 lncRNA downstream 3974 5215808 ~ 5217706 (-) True XLOC_008989
TCONS_00018810 lncRNA downstream 18513 5202251 ~ 5203167 (-) True XLOC_008986
TCONS_00017703 lncRNA downstream 735813 4445060 ~ 4485867 (-) True XLOC_008974
TCONS_00017701 lncRNA downstream 776082 4429018 ~ 4445598 (-) False XLOC_008974
TCONS_00017697 lncRNA downstream 785249 4422481 ~ 4436431 (-) False XLOC_008974
TCONS_00017751 lncRNA upstream 564589 5787186 ~ 5791331 (-) False XLOC_009005
TCONS_00017753 lncRNA upstream 572366 5794963 ~ 5797918 (-) True XLOC_009005
TCONS_00017759 lncRNA upstream 675813 5898410 ~ 5901485 (-) False XLOC_009008
TCONS_00019119 lncRNA upstream 675813 5898410 ~ 5901982 (-) False XLOC_009008
TCONS_00017758 lncRNA upstream 676307 5898904 ~ 5901478 (-) False XLOC_009008
TCONS_00017724 mRNA downstream 3987 5215807 ~ 5217693 (-) False XLOC_008989
TCONS_00017723 mRNA downstream 8750 5210468 ~ 5212930 (-) True XLOC_008988
TCONS_00017722 mRNA downstream 13875 5205538 ~ 5207805 (-) True XLOC_008987
TCONS_00017721 mRNA downstream 18309 5202054 ~ 5203371 (-) False XLOC_008986
TCONS_00017720 mRNA downstream 23489 5196715 ~ 5198191 (-) True XLOC_008985
TCONS_00017727 mRNA upstream 5983 5228580 ~ 5230423 (-) True XLOC_008991
TCONS_00017728 mRNA upstream 14999 5237596 ~ 5239536 (-) False XLOC_008992
TCONS_00017729 mRNA upstream 15670 5238267 ~ 5239184 (-) True XLOC_008992
TCONS_00017730 mRNA upstream 20243 5242840 ~ 5245726 (-) False XLOC_008993
TCONS_00017731 mRNA upstream 22750 5245347 ~ 5245752 (-) True XLOC_008993
TCONS_00017702 other downstream 739450 4435465 ~ 4482230 (-) False XLOC_008974
TCONS_00017700 other downstream 739533 4426494 ~ 4482147 (-) False XLOC_008974
TCONS_00017694 other downstream 856408 4365158 ~ 4365272 (-) True XLOC_008973
TCONS_00017689 other downstream 1117154 4104408 ~ 4104526 (-) True XLOC_008968
TCONS_00017655 other downstream 2485182 2736383 ~ 2736498 (-) True XLOC_008940
TCONS_00017735 other upstream 160465 5383062 ~ 5383180 (-) True XLOC_008997
TCONS_00017752 other upstream 566741 5789338 ~ 5795415 (-) False XLOC_009005
TCONS_00017769 other upstream 1704421 6927018 ~ 6946091 (-) False XLOC_009012
TCONS_00017770 other upstream 1716291 6938888 ~ 6940927 (-) True XLOC_009012
TCONS_00017772 other upstream 1726074 6948671 ~ 6966239 (-) False XLOC_009013

Expression Profile

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