RNA id: TCONS_00017727


Basic Information

Item Value
RNA id TCONS_00017727
length 1601
RNA type mRNA
GC content 0.33
exon number 2
gene id XLOC_008991
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 5228580 ~ 5230423 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGATTAGTCCTTACatttcaaataaagaaacaatGTATCACAGCAGGTCACTGATGGAAAACCTTGTTGCCTAAagcaaaatggaaaattatacCAGTTTTAACTTCATGTTGTTTGAAAATCTTGGGTTCATAAGATATGCTCTCTTCATTTTGGGTTTTGTTCTGTACTTTGCTATAATACTCTTTAATGTCCTTATAATGCTTGCGGTGTTTCTGGAAAGGACATTACACCAGCCTATGTACATTCTGATTTCATGCTTGTCTATGAACTCTTTATTTGGTACAGCTGGATTTTTCCCAAGAGTTCTGTCAGACTTGCTGTCTGAAACACACTCAATCTCTCGTGAAGCATGCTTCTTCCAGTGTTTTGTCATTTTCACATATGCAGCAAATGAGTTCTCAATATTAATGTTAATGGCGTTTGACAGATTTGCTGCAATTTGTAAACCTTTACGTTACCACAGCATAGTTAGACCGAGGTTTCTTGCTTGTTTAATAGTTACAAACTTGACTATTCCAATGATTTTGCTTGCTGTTGGTTCACTTTTAACTACCAAACTGAGAATGTGTGGTAACAAACTAACTAAGGTATACTGCCATACATATGAAGTAGTCAAGCTTTCTTGTGACAACATCGCAATCAACAATGCTTTTGGcttgtttatattaataataactaccATCATTCCTTTAGGTTTAATATCATTTTCCTATGTAAAAATTCTTATCATTTGTCAGAGAAGCTCAGCACAGTTCAAAGGCAAAGCTTTTCAAACCTGTATTCCACACATAGTGGTACTTTTGAATTTCACAATGGCTGTAACATGTGATGTCACTTTGAGTCGGGTTGCAAATTTACAAATTCCTGTAGGTCTGTCAGTTTTCCTTTCACTTGAGTTTCTCATTATACCACCAATACTCAACCCTCTTATTTACGCCTTTAACCTGCCTGATATTCGCAAAAAAATGATCAGCCTTGTAAAACCATAGAGATAGTTATTTAGTTTGttcgttctttttttttttagatgcaatatatattgcacacTCTCATTAAAGTTGTCTTTCATAGTACATTGTCATATTACTGTACTTGTTTACTGTAACAAAACAGCATTCATAATAATTTGAAAACAAATCAGTTGTAAATTAAAGACAAAAATACTGTTatactgtttattagtacttatttgGTATGATCCTATATTATATCACTAATCCTACCCCAATAACTTAACCAAACTATTAcattactattaataaacagaaaatctgtagtttattgagctaagtCTTAGTTAATGGCTTTTAAGTAGCGATAACTTTACCTTGAACTAAAGTGTGACAatgactttatattattattaataatattatagctattattattttaaatctcaCAGAATAGTAGCTTTTTGTTTACAGATTGAATTTGCATCCCCTCGTTTAATCTGGCTGTTTGTTAAATCCAATTTACACACAACATTGTGAAACTGCCATTTCTCATATCTGTGACGCTAGTGTGTCCCGCTTAACTCTGAAAGGAAAGCAgatcatttgtaaaaataaaaatatggcaATAAAAATTGTTTGCTGAA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0050896 response to stimulus biological_process
GO:0007608 sensory perception of smell biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0004984 olfactory receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070806-108 Predicted to enable odorant binding activity and olfactory receptor activity. Predicted to be involved in detection of chemical stimulus involved in sensory perception of smell. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDART00000174322

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018811 lncRNA downstream 10874 5215808 ~ 5217706 (-) True XLOC_008989
TCONS_00018810 lncRNA downstream 25413 5202251 ~ 5203167 (-) True XLOC_008986
TCONS_00017703 lncRNA downstream 742713 4445060 ~ 4485867 (-) True XLOC_008974
TCONS_00017701 lncRNA downstream 782982 4429018 ~ 4445598 (-) False XLOC_008974
TCONS_00017697 lncRNA downstream 792149 4422481 ~ 4436431 (-) False XLOC_008974
TCONS_00017751 lncRNA upstream 556763 5787186 ~ 5791331 (-) False XLOC_009005
TCONS_00017753 lncRNA upstream 564540 5794963 ~ 5797918 (-) True XLOC_009005
TCONS_00017759 lncRNA upstream 667987 5898410 ~ 5901485 (-) False XLOC_009008
TCONS_00019119 lncRNA upstream 667987 5898410 ~ 5901982 (-) False XLOC_009008
TCONS_00017758 lncRNA upstream 668481 5898904 ~ 5901478 (-) False XLOC_009008
TCONS_00017725 mRNA downstream 5656 5220992 ~ 5222924 (-) False XLOC_008990
TCONS_00017726 mRNA downstream 5983 5221680 ~ 5222597 (-) True XLOC_008990
TCONS_00017724 mRNA downstream 10887 5215807 ~ 5217693 (-) False XLOC_008989
TCONS_00017723 mRNA downstream 15650 5210468 ~ 5212930 (-) True XLOC_008988
TCONS_00017722 mRNA downstream 20775 5205538 ~ 5207805 (-) True XLOC_008987
TCONS_00017728 mRNA upstream 7173 5237596 ~ 5239536 (-) False XLOC_008992
TCONS_00017729 mRNA upstream 7844 5238267 ~ 5239184 (-) True XLOC_008992
TCONS_00017730 mRNA upstream 12417 5242840 ~ 5245726 (-) False XLOC_008993
TCONS_00017731 mRNA upstream 14924 5245347 ~ 5245752 (-) True XLOC_008993
TCONS_00017732 mRNA upstream 20531 5250954 ~ 5252673 (-) True XLOC_008994
TCONS_00017702 other downstream 746350 4435465 ~ 4482230 (-) False XLOC_008974
TCONS_00017700 other downstream 746433 4426494 ~ 4482147 (-) False XLOC_008974
TCONS_00017694 other downstream 863308 4365158 ~ 4365272 (-) True XLOC_008973
TCONS_00017689 other downstream 1124054 4104408 ~ 4104526 (-) True XLOC_008968
TCONS_00017655 other downstream 2492082 2736383 ~ 2736498 (-) True XLOC_008940
TCONS_00017735 other upstream 152639 5383062 ~ 5383180 (-) True XLOC_008997
TCONS_00017752 other upstream 558915 5789338 ~ 5795415 (-) False XLOC_009005
TCONS_00017769 other upstream 1696595 6927018 ~ 6946091 (-) False XLOC_009012
TCONS_00017770 other upstream 1708465 6938888 ~ 6940927 (-) True XLOC_009012
TCONS_00017772 other upstream 1718248 6948671 ~ 6966239 (-) False XLOC_009013

Expression Profile

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