RNA id: TCONS_00017728


Basic Information

Item Value
RNA id TCONS_00017728
length 1682
RNA type mRNA
GC content 0.32
exon number 2
gene id XLOC_008992
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 5237596 ~ 5239536 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTTTTCCTCAcatattaaataaagaaacaatggTCAACAATGTTCATGTGTCACAGAAGGTCACTAATGGGAAACCTTGGTTCCTAAAGCAAAATGGAAAATAATACCAGTTTTAACTTCATGTTGTTTGAAAATCTAGGATACATAAGATATGCTCTCTTCATTTTGGgttttgttctgtattttgcTATAATACTCTTTAATGTCCTTATAATGCTTGCAGTGTTTCGGGAAAGGACATTACACCAGCCTATGTACATTCTGATTTCATGCTTGTCTATGAACTCTTTATTTGGTACAGCTGGCTTTTTCCCAAGAGTTCTGTCAGACTTGCTGTCTGAAACACACTCAATCTCTCGTGAAGCATGCTTCTTCCAGTCTTTTGTCATTTTCACATATGCAGCAAATGAGTTCACAATATTAATGTTAATGGCGTTTGACAGATTTGCTGCAATTTGTAAACCTTTACGTTACCACAGCATAGTTAGACCAAGGTTTCTTGCTTGTTTAATAGTTATAAACCTGACTTTTCCAATGATTTTGCTTGGTGTTTCTGCACTTTTAACTACCAAACTAAAAATGTGTGGTAACAAACTATTTAAGGTGTACTGCCATAGCTATGAAGTAGTCAAGCTTTCTTGTGACAACATCGCAATCAATAATGCTTTTGGCttgtttatagtaataataactaCCATCATCCCAATAAGTTCAATACTATTTTCCTATGTAAAAATTCTTATCATTTGTCAGAGAAGCTCAGCACAGTTAAAAGGCAAAGCATATCAAACCTGTATTCCACACATAGTGGTCCTGTTGAATTTCACAATTGCTGTAACATGTGATGTCACTTTGAGTCGGGTTGCGAATTTGCAAATTCCTGTAGGTCTGTCCGTTTTTCTTTCACTCGAGTTTCTTATTATACCACCTGTACTCAACCcccttatttatgcttttaaccTGCCTGATATTCGCAAAAAAATGGTCAGCCTTATAAAACCATTGAGATAGTTATTTAGTTTGTTTGGTCTTTTCTGTTCAGATGTAGTACAAATTGCACACTCTCATTAAAGTTGTCTTTTATGTTACAATAATGTCAAGTTACTGTATGTCTTTATGTAATAAAACAGCATGCATgctaaattgaaaacaaatctgttgtgaataaaaaaaaaaatatatatatatatatatatatatatatatatatatatatatatatatattgttatatactCTTTATTAGAACTTAAGATTCTACACTTTTGCACATCACTAATCCAACTCAATAACTAAAACTAACTATTACCTTACTATTAAACAGCAGAAAATgtgtagtttattgagctaagtCTTGGTTAATAGCAATAATTTGACCTTGAAATAAAGTGTAAGAATTActttatattagtattattatttttgttgctattattattattttaaatctcaCAAAATAGTGGCATTTGAAATCTAGATTGAAATTCAGTCCCTTCATTGAATGTACAGTAGCAATTTGTTATATGAGCTTTACACACAATATTGTGAAGTTTCCCATATCTGTGATGTTAATGTGTCTACCTGAACTTTAAAAGGGAACAAATCATGTGTATGAACCCTTGCCAATAAAAATTCTTTGCTGACTTTTCTTTCAGGCTGATGGTTTTTAGCTTTTTAAGTTT

Function

GO:

id name namespace
GO:0005886 plasma membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-070806-107 Predicted to enable odorant binding activity and olfactory receptor activity. Predicted to be involved in detection of chemical stimulus involved in sensory perception of smell. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDART00000081704

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018811 lncRNA downstream 19890 5215808 ~ 5217706 (-) True XLOC_008989
TCONS_00018810 lncRNA downstream 34429 5202251 ~ 5203167 (-) True XLOC_008986
TCONS_00017703 lncRNA downstream 751729 4445060 ~ 4485867 (-) True XLOC_008974
TCONS_00017701 lncRNA downstream 791998 4429018 ~ 4445598 (-) False XLOC_008974
TCONS_00017697 lncRNA downstream 801165 4422481 ~ 4436431 (-) False XLOC_008974
TCONS_00017751 lncRNA upstream 547650 5787186 ~ 5791331 (-) False XLOC_009005
TCONS_00017753 lncRNA upstream 555427 5794963 ~ 5797918 (-) True XLOC_009005
TCONS_00017759 lncRNA upstream 658874 5898410 ~ 5901485 (-) False XLOC_009008
TCONS_00019119 lncRNA upstream 658874 5898410 ~ 5901982 (-) False XLOC_009008
TCONS_00017758 lncRNA upstream 659368 5898904 ~ 5901478 (-) False XLOC_009008
TCONS_00017727 mRNA downstream 7173 5228580 ~ 5230423 (-) True XLOC_008991
TCONS_00017725 mRNA downstream 14672 5220992 ~ 5222924 (-) False XLOC_008990
TCONS_00017726 mRNA downstream 14999 5221680 ~ 5222597 (-) True XLOC_008990
TCONS_00017724 mRNA downstream 19903 5215807 ~ 5217693 (-) False XLOC_008989
TCONS_00017723 mRNA downstream 24666 5210468 ~ 5212930 (-) True XLOC_008988
TCONS_00017730 mRNA upstream 3304 5242840 ~ 5245726 (-) False XLOC_008993
TCONS_00017731 mRNA upstream 5811 5245347 ~ 5245752 (-) True XLOC_008993
TCONS_00017732 mRNA upstream 11418 5250954 ~ 5252673 (-) True XLOC_008994
TCONS_00017733 mRNA upstream 22113 5261649 ~ 5262942 (-) True XLOC_008995
TCONS_00017734 mRNA upstream 67592 5307128 ~ 5309213 (-) True XLOC_008996
TCONS_00017702 other downstream 755366 4435465 ~ 4482230 (-) False XLOC_008974
TCONS_00017700 other downstream 755449 4426494 ~ 4482147 (-) False XLOC_008974
TCONS_00017694 other downstream 872324 4365158 ~ 4365272 (-) True XLOC_008973
TCONS_00017689 other downstream 1133070 4104408 ~ 4104526 (-) True XLOC_008968
TCONS_00017655 other downstream 2501098 2736383 ~ 2736498 (-) True XLOC_008940
TCONS_00017735 other upstream 143526 5383062 ~ 5383180 (-) True XLOC_008997
TCONS_00017752 other upstream 549802 5789338 ~ 5795415 (-) False XLOC_009005
TCONS_00017769 other upstream 1687482 6927018 ~ 6946091 (-) False XLOC_009012
TCONS_00017770 other upstream 1699352 6938888 ~ 6940927 (-) True XLOC_009012
TCONS_00017772 other upstream 1709135 6948671 ~ 6966239 (-) False XLOC_009013