RNA id: TCONS_00017733


Basic Information

Item Value
RNA id TCONS_00017733
length 1294
RNA type mRNA
GC content 0.36
exon number 1
gene id XLOC_008995
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 5261649 ~ 5262942 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACAGGTAGTGTCGCCTTGTCCTTCGCTATTCTGGGCATCTCTCTCGACTGTTGTTCAAAAAATATTACTGGAGCAAAGAAAAGCTGAACAAAGAAGATTGAAAACTAgcaagtaaacatttattttgtcatgCTTTTATAGCTTTGAGGAACAAATGGAAAATGGGACCAtgtcttcttctttttatttcactttgttCAAGGAGTTTGTACACATCAGATATGTCATCCTAACCCTGACACTTACAGTGTATTTGGCAATTATAGTATGCAATGCCATCATTTTGTTTGTGGTGTTTAAAGAGAGATCTCTTCATGAACCAATGTACATACTGATATCTTGTTTGTCTGTCAACGATCTCTATGGCTCCGCTGGTTTCTTTCCCAGGTTAATTGCTGATCTCCTTTCTGATACAAATGCTATATCTAGGCCAGCATGTTTCGTTCAGATATTCACTATTTATTCTTATGCGATGTCTGAATATACTATATTGACCCTGATGGCATATGACAGATATGTTGCTATATGTAATCCTTTGAAGTATCACAAAATCATGAGTTTAAGATTAACAGCTCGGTACATGGCCATGGCATCGTTTTGTGTGGTTTTTTCCATGGCTCtcgttattttcttttcagccaaGTTGCCTTTGTGTGGGACCGATGTGACTCGACTGTATTGCTCCAACTGGTCTGTGGTTCGACTCTCTTGCGGGACTTCGACTTTGAGTAACAACATATTAGGGTTTTTTGTCACAACCGCAACTGTTTTTCTCCCTGCCTTCTTCATTCTATATACATACATccgtattttaattatttgtcaaaAAAGCTCCAAAGAATTTAAAGGCAAGGCGCTGCAAACGTGTCTACCTCACATTGTGAGCTTTGTTAACTACTCTATAGCATCGTTTTGTGATATTGCTCTAAGTCGAAATGATTCAGACAAAATCAAGATATTGACAATCATATTTTCAGTTGAATTCCTGGTTATTCCTCCTGTTCTCAATCCTCTAATTTATGGGCTAAATTTGCCAGAAATTCGCAAAAAAATTGCATGCTTGTTTCGAAGGTCAAAAATTGGCCATTTTATTGAATAAGAGagcattactttattttaaaagctaatttaCTTTGTCCACAGACAACATTACTGTACATACGATTGATTTCATCATCTTGTTTATGTTCTGTAACCATATTCAATTAAATAACTGTAGCATTTGTTATATTTCCCTATTCTTACATGTAACCAAGTTAGTAACTCTgtacatttttctaaaaaaaaaaaaaaa

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0050896 response to stimulus biological_process
GO:0007608 sensory perception of smell biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0004984 olfactory receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070806-105 Predicted to enable odorant binding activity and olfactory receptor activity. Predicted to be involved in detection of chemical stimulus involved in sensory perception of smell. Predicted to act upstream of or within G protein-coupled receptor signaling pathway and sensory perception of smell. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Orthologous to human OR6K6 (olfactory receptor family 6 subfamily K member 6).

Ensembl:

ensembl_id ENSDART00000138003

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018811 lncRNA downstream 43943 5215808 ~ 5217706 (-) True XLOC_008989
TCONS_00018810 lncRNA downstream 58482 5202251 ~ 5203167 (-) True XLOC_008986
TCONS_00017703 lncRNA downstream 775782 4445060 ~ 4485867 (-) True XLOC_008974
TCONS_00017701 lncRNA downstream 816051 4429018 ~ 4445598 (-) False XLOC_008974
TCONS_00017697 lncRNA downstream 825218 4422481 ~ 4436431 (-) False XLOC_008974
TCONS_00017751 lncRNA upstream 524244 5787186 ~ 5791331 (-) False XLOC_009005
TCONS_00017753 lncRNA upstream 532021 5794963 ~ 5797918 (-) True XLOC_009005
TCONS_00017759 lncRNA upstream 635468 5898410 ~ 5901485 (-) False XLOC_009008
TCONS_00019119 lncRNA upstream 635468 5898410 ~ 5901982 (-) False XLOC_009008
TCONS_00017758 lncRNA upstream 635962 5898904 ~ 5901478 (-) False XLOC_009008
TCONS_00017732 mRNA downstream 8976 5250954 ~ 5252673 (-) True XLOC_008994
TCONS_00017731 mRNA downstream 15897 5245347 ~ 5245752 (-) True XLOC_008993
TCONS_00017730 mRNA downstream 15923 5242840 ~ 5245726 (-) False XLOC_008993
TCONS_00017728 mRNA downstream 22113 5237596 ~ 5239536 (-) False XLOC_008992
TCONS_00017729 mRNA downstream 22465 5238267 ~ 5239184 (-) True XLOC_008992
TCONS_00017734 mRNA upstream 44186 5307128 ~ 5309213 (-) True XLOC_008996
TCONS_00017736 mRNA upstream 127792 5390734 ~ 5467477 (-) True XLOC_008998
TCONS_00017737 mRNA upstream 232061 5495003 ~ 5524271 (-) True XLOC_008999
TCONS_00017738 mRNA upstream 279126 5542068 ~ 5563551 (-) True XLOC_009000
TCONS_00017739 mRNA upstream 302699 5565641 ~ 5624361 (-) False XLOC_009001
TCONS_00017702 other downstream 779419 4435465 ~ 4482230 (-) False XLOC_008974
TCONS_00017700 other downstream 779502 4426494 ~ 4482147 (-) False XLOC_008974
TCONS_00017694 other downstream 896377 4365158 ~ 4365272 (-) True XLOC_008973
TCONS_00017689 other downstream 1157123 4104408 ~ 4104526 (-) True XLOC_008968
TCONS_00017655 other downstream 2525151 2736383 ~ 2736498 (-) True XLOC_008940
TCONS_00017735 other upstream 120120 5383062 ~ 5383180 (-) True XLOC_008997
TCONS_00017752 other upstream 526396 5789338 ~ 5795415 (-) False XLOC_009005
TCONS_00017769 other upstream 1664076 6927018 ~ 6946091 (-) False XLOC_009012
TCONS_00017770 other upstream 1675946 6938888 ~ 6940927 (-) True XLOC_009012
TCONS_00017772 other upstream 1685729 6948671 ~ 6966239 (-) False XLOC_009013

Expression Profile

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