Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00017736 |
| length | 1621 |
| RNA type | mRNA |
| GC content | 0.48 |
| exon number | 16 |
| gene id | XLOC_008998 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007126.7 |
| NCBI id | CM002899.2 |
| chromosome length | 48040578 |
| location | 5390734 ~ 5467477 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0045746 | negative regulation of Notch signaling pathway | biological_process |
| GO:0002031 | G protein-coupled receptor internalization | biological_process |
| GO:1903978 | regulation of microglial cell activation | biological_process |
| GO:0070374 | positive regulation of ERK1 and ERK2 cascade | biological_process |
| GO:0035162 | embryonic hemopoiesis | biological_process |
| GO:0048368 | lateral mesoderm development | biological_process |
| GO:0001919 | regulation of receptor recycling | biological_process |
| GO:1900136 | regulation of chemokine activity | biological_process |
| GO:0098508 | endothelial to hematopoietic transition | biological_process |
| GO:0007165 | signal transduction | biological_process |
| GO:0005829 | cytosol | cellular_component |
| GO:0005886 | plasma membrane | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0031410 | cytoplasmic vesicle | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0005515 | protein binding | molecular_function |
| GO:0001664 | G protein-coupled receptor binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-060824-1 | Predicted to enable G protein-coupled receptor binding activity. Acts upstream of or within several processes, including endothelial to hematopoietic transition; regulation of microglial cell activation; and regulation of signal transduction. Predicted to be active in several cellular components, including cytoplasmic vesicle; cytosol; and nucleus. Is expressed in neural rod. Orthologous to human ARRB1 (arrestin beta 1). |
| ensembl_id | ENSDART00000123839 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00018811 | lncRNA | downstream | 173028 | 5215808 ~ 5217706 (-) | True | XLOC_008989 |
| TCONS_00018810 | lncRNA | downstream | 187567 | 5202251 ~ 5203167 (-) | True | XLOC_008986 |
| TCONS_00017703 | lncRNA | downstream | 904867 | 4445060 ~ 4485867 (-) | True | XLOC_008974 |
| TCONS_00017701 | lncRNA | downstream | 945136 | 4429018 ~ 4445598 (-) | False | XLOC_008974 |
| TCONS_00017697 | lncRNA | downstream | 954303 | 4422481 ~ 4436431 (-) | False | XLOC_008974 |
| TCONS_00017751 | lncRNA | upstream | 319709 | 5787186 ~ 5791331 (-) | False | XLOC_009005 |
| TCONS_00017753 | lncRNA | upstream | 327486 | 5794963 ~ 5797918 (-) | True | XLOC_009005 |
| TCONS_00017759 | lncRNA | upstream | 430933 | 5898410 ~ 5901485 (-) | False | XLOC_009008 |
| TCONS_00019119 | lncRNA | upstream | 430933 | 5898410 ~ 5901982 (-) | False | XLOC_009008 |
| TCONS_00017758 | lncRNA | upstream | 431427 | 5898904 ~ 5901478 (-) | False | XLOC_009008 |
| TCONS_00017734 | mRNA | downstream | 81521 | 5307128 ~ 5309213 (-) | True | XLOC_008996 |
| TCONS_00017733 | mRNA | downstream | 127792 | 5261649 ~ 5262942 (-) | True | XLOC_008995 |
| TCONS_00017732 | mRNA | downstream | 138061 | 5250954 ~ 5252673 (-) | True | XLOC_008994 |
| TCONS_00017731 | mRNA | downstream | 144982 | 5245347 ~ 5245752 (-) | True | XLOC_008993 |
| TCONS_00017730 | mRNA | downstream | 145008 | 5242840 ~ 5245726 (-) | False | XLOC_008993 |
| TCONS_00017737 | mRNA | upstream | 27526 | 5495003 ~ 5524271 (-) | True | XLOC_008999 |
| TCONS_00017738 | mRNA | upstream | 74591 | 5542068 ~ 5563551 (-) | True | XLOC_009000 |
| TCONS_00017739 | mRNA | upstream | 98164 | 5565641 ~ 5624361 (-) | False | XLOC_009001 |
| TCONS_00017740 | mRNA | upstream | 98709 | 5566186 ~ 5624456 (-) | False | XLOC_009001 |
| TCONS_00017741 | mRNA | upstream | 103094 | 5570571 ~ 5580093 (-) | True | XLOC_009001 |
| TCONS_00017735 | other | downstream | 7554 | 5383062 ~ 5383180 (-) | True | XLOC_008997 |
| TCONS_00017702 | other | downstream | 908504 | 4435465 ~ 4482230 (-) | False | XLOC_008974 |
| TCONS_00017700 | other | downstream | 908587 | 4426494 ~ 4482147 (-) | False | XLOC_008974 |
| TCONS_00017694 | other | downstream | 1025462 | 4365158 ~ 4365272 (-) | True | XLOC_008973 |
| TCONS_00017689 | other | downstream | 1286208 | 4104408 ~ 4104526 (-) | True | XLOC_008968 |
| TCONS_00017752 | other | upstream | 321861 | 5789338 ~ 5795415 (-) | False | XLOC_009005 |
| TCONS_00017769 | other | upstream | 1459541 | 6927018 ~ 6946091 (-) | False | XLOC_009012 |
| TCONS_00017770 | other | upstream | 1471411 | 6938888 ~ 6940927 (-) | True | XLOC_009012 |
| TCONS_00017772 | other | upstream | 1481194 | 6948671 ~ 6966239 (-) | False | XLOC_009013 |
| TCONS_00017773 | other | upstream | 1481416 | 6948893 ~ 6966245 (-) | False | XLOC_009013 |
| species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
|---|---|---|---|---|---|---|---|---|
| grasscarp (Ctenopharyngodon idella) | CI01000092_02522204_02531634.mRNA | True | 1183 | mRNA | 0.42 | 12 | CI01000092 | 2522123 ~ 2531634 (-) |
