RNA id: TCONS_00017737


Basic Information

Item Value
RNA id TCONS_00017737
length 1376
RNA type mRNA
GC content 0.42
exon number 5
gene id XLOC_008999
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 5495003 ~ 5524271 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tTAAGGGTaattaagtcattgtataacagtggtttgttctgtaaaaaattgaaaaaataattgcttaagggggctaataagaTTGACCATAACATTttagggggaaaaaattaaaactgcttttattctagccaaaataaaactaataagactttcttgagaagaaaaaatattataggaaatactgagaaaaatttcttgctctgtatATTATTGTTTGGGAAAGAGATATAAAAAAATCCACTGAAGGGTTAATAATAGCGAATAGCATAGAATCCccaagaggtgacactctagtgcgatttggtaagcagccactagagggcgcggcgtccattttggaatgaaactCCAATAGAAgagcagcatattataagtctgtaaaataaactgaatagtgctgatgattgtgatagtaagtgttgtattgtattgTCTTTTAGGTTGTTTCTCAGCTtcaatgcgctttttaaataaataaatataaaacaaagcaactgcttgccatcgcgacagcagtaagatccaatggacagccgatcactTTCCGGGGCTCcgggaatccggggctgttgctgggcgctgctgttgcaatggaacgttctattgagtgtcgcctcttggtcattctaggCTCTTTGATAAtagtgactttaactgtatatagtcTCACATTTTCTCATGTTTAGTTTAAATTGTGTATTAATCATAAAGCACAATGTAAATCACTTtagaaaccaaaataaataacaactctTCATTTACTGCAGTGTCTTTTCTTCACAGGATCTCTTCAGAACAGAGGGACTTTAGATGGAAGTAATGAGGGGATCACCAGCATCGAGTTTGACCCGACGGGAACGCGGATTTTAGCTGCGTCATATGACAAGTCGGCTTTATTTTGGAGGCTAGAGGACAGCGTTCCCAAGGTCACGTTGACGGGTCATTCTCGTAAAGTGACCGCGGCCAGATTTAAATACAGTCAGAGGCAGGTGGTCACGGGCAGTGCAGACAGAACTGTGAAGATATGGGACCTCCAGCGAGCAGCGTGCATACAGACCATTGAGGTTTTGTCTTTCTGCAGCGACGTGGTGTGTTCAGAGTACCTTATCATCAGCAGCCATTATGACAAGAAAATACGGTTTTGGGACAGCAGGGCAGCGACCTGCACACAGGAAGTGCCTCTTCAGGGCAGAGTGACATCACTGGACCTTTGCCCGAACCACAGACAGCTGCTCAGCTGCTCCAGAGACAACATCCTGCAGCTGGTGGACCTAAGAAAGAGCAACGACAGGGTGGCCTTCAGGTACACCACACACATCTGAGACACATACAAATAGAAACACACTAAATATGAGGGAAAGCTGTAGTGAGCT

Function

GO:

id name namespace
GO:0000045 autophagosome assembly biological_process
GO:0039689 negative stranded viral RNA replication biological_process
GO:0000421 autophagosome membrane cellular_component

KEGG:

id description
ko04140 Autophagy - animal
ko04131 Membrane trafficking
ko03029 Mitochondrial biogenesis

ZFIN:

id description
ZDB-GENE-060503-197 Predicted to be involved in autophagosome assembly and negative stranded viral RNA replication. Predicted to be active in autophagosome membrane. Orthologous to human ATG16L2 (autophagy related 16 like 2).

Ensembl:

ensembl_id ENSDART00000130297

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018811 lncRNA downstream 277297 5215808 ~ 5217706 (-) True XLOC_008989
TCONS_00018810 lncRNA downstream 291836 5202251 ~ 5203167 (-) True XLOC_008986
TCONS_00017703 lncRNA downstream 1009136 4445060 ~ 4485867 (-) True XLOC_008974
TCONS_00017701 lncRNA downstream 1049405 4429018 ~ 4445598 (-) False XLOC_008974
TCONS_00017697 lncRNA downstream 1058572 4422481 ~ 4436431 (-) False XLOC_008974
TCONS_00017751 lncRNA upstream 262915 5787186 ~ 5791331 (-) False XLOC_009005
TCONS_00017753 lncRNA upstream 270692 5794963 ~ 5797918 (-) True XLOC_009005
TCONS_00017759 lncRNA upstream 374139 5898410 ~ 5901485 (-) False XLOC_009008
TCONS_00019119 lncRNA upstream 374139 5898410 ~ 5901982 (-) False XLOC_009008
TCONS_00017758 lncRNA upstream 374633 5898904 ~ 5901478 (-) False XLOC_009008
TCONS_00017736 mRNA downstream 27526 5390734 ~ 5467477 (-) True XLOC_008998
TCONS_00017734 mRNA downstream 185790 5307128 ~ 5309213 (-) True XLOC_008996
TCONS_00017733 mRNA downstream 232061 5261649 ~ 5262942 (-) True XLOC_008995
TCONS_00017732 mRNA downstream 242330 5250954 ~ 5252673 (-) True XLOC_008994
TCONS_00017731 mRNA downstream 249251 5245347 ~ 5245752 (-) True XLOC_008993
TCONS_00017738 mRNA upstream 17797 5542068 ~ 5563551 (-) True XLOC_009000
TCONS_00017739 mRNA upstream 41370 5565641 ~ 5624361 (-) False XLOC_009001
TCONS_00017740 mRNA upstream 41915 5566186 ~ 5624456 (-) False XLOC_009001
TCONS_00017741 mRNA upstream 46300 5570571 ~ 5580093 (-) True XLOC_009001
TCONS_00017743 mRNA upstream 103606 5627877 ~ 5720583 (-) False XLOC_009002
TCONS_00017735 other downstream 111823 5383062 ~ 5383180 (-) True XLOC_008997
TCONS_00017702 other downstream 1012773 4435465 ~ 4482230 (-) False XLOC_008974
TCONS_00017700 other downstream 1012856 4426494 ~ 4482147 (-) False XLOC_008974
TCONS_00017694 other downstream 1129731 4365158 ~ 4365272 (-) True XLOC_008973
TCONS_00017689 other downstream 1390477 4104408 ~ 4104526 (-) True XLOC_008968
TCONS_00017752 other upstream 265067 5789338 ~ 5795415 (-) False XLOC_009005
TCONS_00017769 other upstream 1402747 6927018 ~ 6946091 (-) False XLOC_009012
TCONS_00017770 other upstream 1414617 6938888 ~ 6940927 (-) True XLOC_009012
TCONS_00017772 other upstream 1424400 6948671 ~ 6966239 (-) False XLOC_009013
TCONS_00017773 other upstream 1424622 6948893 ~ 6966245 (-) False XLOC_009013

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000092_02570666_02599836.mRNA True 1234 mRNA 0.48 8 CI01000092 2570196 ~ 2599836 (-)