RNA id: TCONS_00017738


Basic Information

Item Value
RNA id TCONS_00017738
length 1007
RNA type mRNA
GC content 0.49
exon number 9
gene id XLOC_009000
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 5542068 ~ 5563551 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGCTTTCCACAATGGAAAACAGACACACGGGTTCAGGATGACGGCCATGAACTATGACTAGGAAACTGTACCGTTGTTACTGcgctttttattattgtttatgatcATGGCGGCGGCGATAAACTCTGAACCTAAACGCCAGAACGAAACATGGAAGCGTCACATTATCAGACAGCTGAAAAACCGCAACAGGACACAGACGAGCCTCTTCCAGGACATTATACAGTCATATCACAGTCTGCTGGAGAAGTCCAAGCAAAGAGCCCTCATAACCAAAGGCATTCTGGGATCAGGGTCAAGGACCTCACCAGTTCCCTCATCGGAAGATTCGCTGGCCTCCCTAAAGACCACCACCGGTGAGCTTGCATACCAAGTGGTGGAACTGCAGCAGAGAGTCCAGATGAAGGAAGTGACGCTGGATGAACAGCATAACAAGTTGTTTGAGGTTCAAAACCATCTTAGTATTATGACATTAGAACACAGCGAGCTTCAGGAACGCGTGACGGAGGTGCAGACTGGAAACCGACTCCTCAAACAAAAATATGACTCTCTCCTGGAGCAGCACCAGAATATGGAGAAAACATACCGGCAGGAGAAACTCCACAGCGCAGACATCCTGGAGAACATGATCCGACCAAAGCAGCAGGCTGCTGCCCGCATGAACCACCGCAATGAGAAGAGAGTGAGAGCCAGAGAGGCCAGCATTCACAAAGAGCTTCAGGAGGCTGCCAATAAGAATGTCAATATTAATGAAGAGTCTGGAAATGTTTCACCTCCCAACCCGTCATCTCCTCAATGTGAAACTGCAGAGAGGTTGGAAAGATCCCACGGGCCGCTGTTCAGGTCTGCTTCAGCTACGTCTCCCCGCATCATCAGCTCCATCAGGGGTCTTTTTGAGAGGAAGATTCGAGGTAAATCAGTTTGCCGGTCAGAAGAGGATCTCTATATACCATTAGGAGTCTGTCTGGCTGCCAGAGTTCCAACCAAAGCGATTTCTTCACTGGTGC

Function

GO:

id name namespace
GO:0000045 autophagosome assembly biological_process
GO:0039689 negative stranded viral RNA replication biological_process
GO:0000421 autophagosome membrane cellular_component

KEGG:

id description
ko04140 Autophagy - animal
ko04131 Membrane trafficking
ko03029 Mitochondrial biogenesis

ZFIN:

id description
ZDB-GENE-060503-197 Predicted to be involved in autophagosome assembly and negative stranded viral RNA replication. Predicted to be active in autophagosome membrane. Orthologous to human ATG16L2 (autophagy related 16 like 2).

Ensembl:

ensembl_id ENSDART00000099520

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018811 lncRNA downstream 324362 5215808 ~ 5217706 (-) True XLOC_008989
TCONS_00018810 lncRNA downstream 338901 5202251 ~ 5203167 (-) True XLOC_008986
TCONS_00017703 lncRNA downstream 1056201 4445060 ~ 4485867 (-) True XLOC_008974
TCONS_00017701 lncRNA downstream 1096470 4429018 ~ 4445598 (-) False XLOC_008974
TCONS_00017697 lncRNA downstream 1105637 4422481 ~ 4436431 (-) False XLOC_008974
TCONS_00017751 lncRNA upstream 223635 5787186 ~ 5791331 (-) False XLOC_009005
TCONS_00017753 lncRNA upstream 231412 5794963 ~ 5797918 (-) True XLOC_009005
TCONS_00017759 lncRNA upstream 334859 5898410 ~ 5901485 (-) False XLOC_009008
TCONS_00019119 lncRNA upstream 334859 5898410 ~ 5901982 (-) False XLOC_009008
TCONS_00017758 lncRNA upstream 335353 5898904 ~ 5901478 (-) False XLOC_009008
TCONS_00017737 mRNA downstream 17797 5495003 ~ 5524271 (-) True XLOC_008999
TCONS_00017736 mRNA downstream 74591 5390734 ~ 5467477 (-) True XLOC_008998
TCONS_00017734 mRNA downstream 232855 5307128 ~ 5309213 (-) True XLOC_008996
TCONS_00017733 mRNA downstream 279126 5261649 ~ 5262942 (-) True XLOC_008995
TCONS_00017732 mRNA downstream 289395 5250954 ~ 5252673 (-) True XLOC_008994
TCONS_00017739 mRNA upstream 2090 5565641 ~ 5624361 (-) False XLOC_009001
TCONS_00017740 mRNA upstream 2635 5566186 ~ 5624456 (-) False XLOC_009001
TCONS_00017741 mRNA upstream 7020 5570571 ~ 5580093 (-) True XLOC_009001
TCONS_00017743 mRNA upstream 64326 5627877 ~ 5720583 (-) False XLOC_009002
TCONS_00017742 mRNA upstream 64326 5627877 ~ 5720583 (-) False XLOC_009002
TCONS_00017735 other downstream 158888 5383062 ~ 5383180 (-) True XLOC_008997
TCONS_00017702 other downstream 1059838 4435465 ~ 4482230 (-) False XLOC_008974
TCONS_00017700 other downstream 1059921 4426494 ~ 4482147 (-) False XLOC_008974
TCONS_00017694 other downstream 1176796 4365158 ~ 4365272 (-) True XLOC_008973
TCONS_00017689 other downstream 1437542 4104408 ~ 4104526 (-) True XLOC_008968
TCONS_00017752 other upstream 225787 5789338 ~ 5795415 (-) False XLOC_009005
TCONS_00017769 other upstream 1363467 6927018 ~ 6946091 (-) False XLOC_009012
TCONS_00017770 other upstream 1375337 6938888 ~ 6940927 (-) True XLOC_009012
TCONS_00017772 other upstream 1385120 6948671 ~ 6966239 (-) False XLOC_009013
TCONS_00017773 other upstream 1385342 6948893 ~ 6966245 (-) False XLOC_009013

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000092_02602158_02608405.mRNA True 1295 mRNA 0.43 7 CI01000092 2601686 ~ 2608405 (-)