RNA id: TCONS_00017739


Basic Information

Item Value
RNA id TCONS_00017739
length 5732
RNA type mRNA
GC content 0.48
exon number 32
gene id XLOC_009001
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 5565641 ~ 5624456 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGCGGATGGAGCGGTGAATTTTGGAGCCAGTATGAACCAAAGTTGTTTGACCTCTCGAGCAAAGAAAGCCAACAACAACAGCACTTCAGTTCCAGCGAACACGAGGAGAAAGACTCGACAGAGCCACAGAAGAGACATTCATAACCGGGTTGTCTTGGAGAAGGTGCTTGGCATCACTGCCTCCAGCAGCAGCGCTTTAACCTGTGACCCCAACACCGGTTTAGTGGCTTATCCTGCAGGctGTGTTATAGTCATCCTGAGCCCAAAGAAAAACAAGCAGACGCACATATTTAATACATCCAGGAAAACCTTCAGCGCTTTGGCCTTCTCTCAGAATGGAAAATATTTGGTCACCGGTGAGAGTGGGCACATGCCCTGTGTGCGGGTGTGGGATGTGGCAGAGCGGACGCAGGTGGCAGAGGTCCAGTGTCATAAGTATGGGGTGTCATGTGTGGCATTCTCCCCCAACGGGAGCTATATAGTGTCTGTGGGATACCAACACGACAGGACTGTCAGCGTCTGGGAGTGGAAGaaGGGGACTGTTATCGCGTCTAACAAGGTGTCCAGCCGTGTGCTTGGTGTATCTTTCTCAGAGGACAACAGCTACTTTGTAACTGCAGGCAACAGACATGTGAAGTTCTGGTACCTTGATGCCTCAAAGGAAAGAAGGGTGAACAGCACCGTGCCTCTGATCGGCCGCTCGGGTTTGCTGGGGGAGCATCAGAACAGTCAGTTCTGTGGTTTGGCTTGTGGCCGCGGGTCGATGGCCAGCAGCACCTACTGCATCACACACACGGGTCTGCTGTGCCAATTCAACAGTAACAGACAGCTGGATTCCTGGGTTGATCTCAAGACTACATCAGCACAGTGTTTATCAGTGAGCGGGACGTTTGTTTTTTGCGGTTGTGCCGATGGGACAGTTCGTGTGTTCAGCCCACAGGATCTCCGCTACATCACCACTCTACACCGGCCACATTGTCTGGGAGTGGATGTGTCTCAGGGCACACAGCCAGGGCATTTGTTCAGTGCAAATCCAGAAGCACAGTATCCAGATACCTTGGCTTTAACCTTTGACCCCGTGACCAAGCACTTGACGTGCGTGTATAATGACCACAGCGTGTACGTTTGGGATGTGCGGGACATCAGGAACGTAGGAAAGGTCTATTCAGCCCTGTACCACAGCGGATGTGTGTGGAGTGTGGAGACCTATCCAGAGCTTGAAGATCCATCGGCGGCCTGTTTGTCACCGGGGTCTTTCCTCACTTGCTCATCTGATAACACCATCCGCTTGTGGAGAAGCGAGTCCCCACAGAGTCACAGCGCTGCACTCGGCCTTCGACACAACCTTTATAGCCAGGACATTGTAAGGATAGTGTATGTGGATGACGACACGCAGTACCTCAAAGCTGAAGCTGAGAAAGCAGAGGGAGGTGCTGGTCAGGATGGCAAATCTGGGATCCGGGTGTTGGGAATCAGCCCAGATGGCCAGCATTTGGCTGCTGGAGACCGCAGTGGAAACCTGAGAATCTTTGGCTTGCAGTTTATGGACGAGTTACAGAAAATTGAAGCCCATGATTCAGAGGTCTTGTGTTTAGCCTTCTCCCCTGCTGAGACCGGTTTGCATCTGTTGGCTTCAGCGAGTCGAGATCGACTGATTCACATCTTTGACATGGACAGCAAATGTAACCTCGTGCAGACCGTCTATGATCATTCGGCCTCAATCACTGCTGTCAAGTTTACAGGCTTGAATTCAGAGTTGTGTATGGTCAGCTGTGGCGCAGACAAGAGTGTTTATTTTCGATCTGCTGAGAAAACTTCAGATGGCTTAGTCTTCTCACGATCACATCACATAGTGGAGAAGACAACGCTGTATGACATGGACCTGGAtgccacacgcacacacacagccattgCGTGTCAGGACCGCAACATCAGagTTTACAATGTGAAGAGTGGAAAGATGAAGAAGTGTTTCAAGGGCTCTATGAATGATGACGGGACACTGctaaagGTTCAGTTGGATCCCTCTGGGATGTTCTTGGCCACCAGTTGTTCAGACAAAAATATCTGTGTCTTTGATTATGAGTCAGGCGAATGTGTGGCCACCTTATTTGGACATTCAGAAATAGTTACAGGTATGAAGTTCAGCCAGGACTGCAGGCATCTCATCACTGTGTCTGGTGACAGctgtgtgtttgtgtggcgtCTGGACTCTCAGATGACCAACTCCATGAGGAAGAGGTTGGCAGAGAGGAAGCAGCAAGCAGGCCTGAGGCTCCAGCGGGCTCCCACAAAACAAGAAGTCATCAGACGAGAGACCTACATCACCGTGCCCTGTAATGCACTGACCCATATGGAGGAAGATGGCTTGATGGCTGAAGTAAACCCTGAAGACGGTTTGGAGGACTGCAGAACCCCTGATAGACTCGACTCTACAGATGCATCTTTAGATTCTGTGGTGCTCCAAACCAATGGCAAAATGCCAATGTGGGTCCGCAGACTGGGTGGAGAAGGTGAAAAGGATGGTACCGGCGCCGCTAATAGAGTTCAGTACCAGCCCCAGGGACGCTGGGCAGTGCAGTCAGATCCACTCGCTATCCGCACAGTGCTGGAAATGAAGAGCAATCAGCTTCCTCTCTCACACACTCCCAGCAGAGTCATGGGGgaggaagagctggaggaagaCCCTCGCTTCCACCCGCAGAGCCTGGACAGCCTGCTGGATGAAGATCTTGAAGAtggagaagaggaggaggaggaaaagatATGTGGTgtTTCCAGCGATGGCTTTAGCTCTTCACTCCACGGGCCAGAATTTCTGCAGTTTCCACATGGAGAGGAGAACTTCAATCCAGAGCTCAGCTCCTCAGAAAAGACCGGATATATTTTATATCCTGCTAACAGCACAGCTCTGTCCACTGGTGAAGGGGAGTTTGATGTTAAAGCTCTGTGTGAGGGCACTGCTGGTGATCCTGATGAAGAGGAGTTAAGTCCAGATAGTGCTTGCTCTGCTGAAAGTCCAGAATCTCATAGTGACCAGCCGCATGACCagGACACAGATTCCCTCAGTCAGGTGAGCTCTACGGGAAGCTCAGGAGTTGAAGAGGATGAAGAAGAATCTGGAACTCTGCTTCGCCAGCATTTCGACACTCTGGGTGTGGCCACAAATGAAAAGTTCAACACTGACTTAAGCAGTCTGCAGCCCACGACAGAGAGCAACTTCCTCAATCCTCGTCTCAGCATCTCTACACGCTTCCTCTCCCGCTTTCAGAGCCGTTTCCGCAGTGCTGCTTGTCGGCCTGCAGCATGCCTGTCCAGTATACCTGATGAGTCCACTGACAGCCAAACCCTGGACCAAACCATGGAAAAGCCCAAGCATCTTTCAAACAGTGGAAGCGTTGAGGAGAAAGAGAAGACTGTTATCAAGAGACGCTCCTCAATGTCTTCTCGGAGAAGCTCAAACCCTTCCTTGTTACGCTGGAAAAATGCATTGGGAGAAATCACAAACAAAAATCAGTCCACGACTCAAAGTACCACTAGTGCTCCAGGCGTTCTCAGCAACAAGTCTACCAGCAACTCATGTGACGCATCTGTTACGCGCTCCCGCCAAAGCTACATGGGTCCCACCGCAAGCTCCCGTGCTAAAATAAACCAAAGCAACTCCGTGGAGAGTCTCAACCTCTGTATATCGGAGGAAACGCCACTAAACGCCTTACCAAATGTCGAGCACAGCAAAGAGAACATGATCCCACCATCCTCTCCTGTGGTTTCGTCTGCACCGCTTCATCAGTCTCCTGTCCTGGGAAACCACAGTGCCCGGGCATCTCTTCGACTGGACCTCATTGGCCACAATCGTGCCAGTTTGTCACCTGTGTCACTGAAGAGCCGCCGAGGGAAGGTCGAACATCACGATTCTCCACGGCGCCAGGCTTTAGTGACGCCCACCGAGATGAGGTCACTGGGGAAAGAGAGTCGCAAGCAAATCTCAAACATTGAGCAGAGTTTGGCCCCTTCAGACAGGCTCTCTACAGGGGCCGGGATGTTTAGCAGGAGCCCCATGGTCAGGCAAACCAGTGATACTGTGTTTGAAGACCTGCAGTCAGTGAGATCTGACCAGACGTCTGTGAGTTCTCCAATGACCAACGCAGTATCTCAGGACAATCAAGATTCTGCAGATAACAACAGCATTCCAGAGGAAACGGGTCTTTCTGCGGAGGCGTTGAGTGTTCAGATGTGTAAGGAGATGGTGAATGAACTCTGGCACACCATCCATAAAGCAACTGACTTGTACAGCAAGCTGTGCTCCATCCCTGAGTTATCAGAGCAGCAGGAGCAGATGAAGGGCGTTTTGCAGGAGGTGTTTGTGGGGGTACAGAGCGAGTTAAATTCAATCTGCCCACAAAAGACACAACCATCGACTAAGAGCACCCGTCCCATATCAGAGGACTCTCCAGGTCGTCAGTTAAGGGATGACCGAGCCGTGGCCCTTCTGGAGAAATACTCTGAAATGCTCTTACTGCGAATGACTGAGAAAGGAGCGCAGGCTACGCTGGAGTAACAGCTTTCTTCCTGTCATCTAATTGGCCAAAACAACCCCCAAATCCCCTAAAAAGCACCTTTAAACCTTAACGTGTTACATTttggttttacatttttaaataaacgtATATGCGTATTTGAAACTTGTTTGCAATGCTGAGTCCTCCacctttttatatttgtttttaacacTACATTTCAGTACATGAGTGTGTATTAGGTCTCGCACacatttcttctttaaaaaaacttCAATCAAGGACTTTTTTTCTTCTCCAAAATGTTTATAGAGTCATGTACAGTTTTGAAACAGTGTTACTTTTGAATGCGAACAATATTATGTAGCGAGTTTTCTCTTGAGGTTCAGGTTGTTTGATGCGTTTGTAGCTCTTCACCATTTCTACAGGGTGTTCTGTTGTCTTATTTCAGGTGTTTTCTTTCTGAATAGTGCTGTGTCGATATTTTCCGTAGCATCAGGCTCTGACTCACAGTTTGCTTGCACTGGTGTGCTGATTATGCTTTGTTAATGTGCAatctattgttgttgtttttcactaAACATCAtgtatagttattttttttaggaaagccttgtaaatatgttttaatcagccatttgtgttttattattaaatgttgaaataatgattgactttttgtgtttttttttttaggttatttGTGATTTTAGTAATGTATACATCAATGTTTTAAAAGGTAGCATGTTTATTTAATCTCACCTTGTTGGAATTTGAAGAAGTACTACACAACAGCCTCCAAAATTAGCGTGAGATTTTGTagcttttgtgttttgttgtcTTCCAGAACTGTCATGGAAGCGTCAAACTACAGTCGTGCGCATGAATCGTCATCGAGTGACTTGTGGCTTTTCTGCGGGGGAAGTGTTAAATAATGAAGCGGTAGTGTTTGTACAGCTGTAGCTTTTCACTGGGTGTTGCTAGCAAGGAAACGAGAAcggtttatgtttgtttttacgaCAGAGGGCGCTGTGCGGCTCAGAAATTCTTGTCTGTAATAAGCAGCCGCCTTATATTGACCTAGTGTAAGTCGTGCTAATCGATGGATTATAGTGAGCATCTAAAATTTAaagttgtattttatatatttattacctCATAGTAAATTTACAAATTCCAGAACTAGTctaaaatgattttaattatCTGCATC

Function

GO: NA

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-060503-291 Used to study microcephaly. Human ortholog(s) of this gene implicated in intellectual disability; polymicrogyria; primary autosomal recessive microcephaly; and primary autosomal recessive microcephaly 2 with or without cortical malformations. Orthologous to human WDR62 (WD repeat domain 62).

Ensembl:

ensembl_id ENSDART00000176446

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018811 lncRNA downstream 347935 5215808 ~ 5217706 (-) True XLOC_008989
TCONS_00018810 lncRNA downstream 362474 5202251 ~ 5203167 (-) True XLOC_008986
TCONS_00017703 lncRNA downstream 1079774 4445060 ~ 4485867 (-) True XLOC_008974
TCONS_00017701 lncRNA downstream 1120043 4429018 ~ 4445598 (-) False XLOC_008974
TCONS_00017697 lncRNA downstream 1129210 4422481 ~ 4436431 (-) False XLOC_008974
TCONS_00017751 lncRNA upstream 162825 5787186 ~ 5791331 (-) False XLOC_009005
TCONS_00017753 lncRNA upstream 170602 5794963 ~ 5797918 (-) True XLOC_009005
TCONS_00017759 lncRNA upstream 274049 5898410 ~ 5901485 (-) False XLOC_009008
TCONS_00019119 lncRNA upstream 274049 5898410 ~ 5901982 (-) False XLOC_009008
TCONS_00017758 lncRNA upstream 274543 5898904 ~ 5901478 (-) False XLOC_009008
TCONS_00017738 mRNA downstream 2090 5542068 ~ 5563551 (-) True XLOC_009000
TCONS_00017737 mRNA downstream 41370 5495003 ~ 5524271 (-) True XLOC_008999
TCONS_00017736 mRNA downstream 98164 5390734 ~ 5467477 (-) True XLOC_008998
TCONS_00017734 mRNA downstream 256428 5307128 ~ 5309213 (-) True XLOC_008996
TCONS_00017733 mRNA downstream 302699 5261649 ~ 5262942 (-) True XLOC_008995
TCONS_00017743 mRNA upstream 3516 5627877 ~ 5720583 (-) False XLOC_009002
TCONS_00017742 mRNA upstream 3516 5627877 ~ 5720583 (-) False XLOC_009002
TCONS_00017744 mRNA upstream 8204 5632565 ~ 5720666 (-) True XLOC_009002
TCONS_00017745 mRNA upstream 98164 5722525 ~ 5742531 (-) False XLOC_009003
TCONS_00017746 mRNA upstream 99552 5723913 ~ 5740358 (-) True XLOC_009003
TCONS_00017735 other downstream 182461 5383062 ~ 5383180 (-) True XLOC_008997
TCONS_00017702 other downstream 1083411 4435465 ~ 4482230 (-) False XLOC_008974
TCONS_00017700 other downstream 1083494 4426494 ~ 4482147 (-) False XLOC_008974
TCONS_00017694 other downstream 1200369 4365158 ~ 4365272 (-) True XLOC_008973
TCONS_00017689 other downstream 1461115 4104408 ~ 4104526 (-) True XLOC_008968
TCONS_00017752 other upstream 164977 5789338 ~ 5795415 (-) False XLOC_009005
TCONS_00017769 other upstream 1302657 6927018 ~ 6946091 (-) False XLOC_009012
TCONS_00017770 other upstream 1314527 6938888 ~ 6940927 (-) True XLOC_009012
TCONS_00017772 other upstream 1324310 6948671 ~ 6966239 (-) False XLOC_009013
TCONS_00017773 other upstream 1324532 6948893 ~ 6966245 (-) False XLOC_009013

Expression Profile

//