RNA id: TCONS_00017743


Basic Information

Item Value
RNA id TCONS_00017743
length 11581
RNA type mRNA
GC content 0.41
exon number 40
gene id XLOC_009002
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 5627877 ~ 5720666 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGCTACTAAACGTGAAAACGAAGAGAATATTACCGAGTCTGTGACAAAAGCAAAGAAAGGCAAAACAGACGAAAGCGAGTTTAGTGGCACTGTTTTTAAATCCATGCTGAAGGATTCATCTGAAGCACAGAAGGGTTTGGCAACCTTCATAAGAGTCGCAAAGACTCTTCCGTGTGCAGAACTGTATGATGTTGTTGAAGGCTACATTAAAATCTCTGCCGAATGTTCGGAAATTTTTGCATTGCTGGATGAAGAAAAGCCAGAGAAGGAGATGATGCTGATATTTCAGTGTCTAGAAATGATATTACTGCGGACGGCCAGTGATCTCTCTCAGTTCAGCATGGTGGGCGCCAACATAGTTAGGAGGATTGTGTCCAAGCACATGACGCTTCTGCAGTCCAGTCTATATTCGAAAAATTACAGGTTTGTCCGCCAGTGTCTGAGTCTACTGTCCGCTCTGGTGTCTCAGAGTGCAGACGCTGCACGAGATGTATTCGGTCAAATGCAGTTCGGCAAAGATCTGTGTCAACTCGCTCGAAAAAGAGACAAATCGggaAAGTCAGATGTTAGAATGGCTTTCATTCAGTTTGTCCTTTCTTTCCTGATGTCTGGAGACAATACAACTATTGGCCAGATTCTGGACACTAAAGAATTATCTGAAATCTTGAACAGTGGACTTAAAGAAGATCGACTGTCCATCATAAACCTGATTCTGTCAACCCTCCAGACTAAAGTTGTGCAGAACAAGACAATCACAAAAACTCAGAAAGTGCGTTTCTTTAGCGCTTCCATACTGGCACAGATCGCTTCTCTTTATAGATGGAACGGGATTGTGGACgtcagtgtggatgaggaggAGAAGGTTGAAGAAGGAGGGAAACATATAATGAGGGAGCTGGTGCATAACTTCCTGATGGATCTCTGCTGCTCTCGGAAACATGGGATCAGTTTTCATGACCCGAGCTTGGGCACCGCTGGAAAAGTAGGAAACCTTGTTCTGCTGCAGTTTCTGGTGCGTCTGAAGCAGGCGACAGAGGACGAGATGGTTGCGGAGCTGGTTGTTAATGTTCTGAAGGGAAGTCCTGATATACTGAACCGATACTTCAAGGAAACCCAGTGTTCATTCGCACCACGAAACAACAAGACCTGGCAGGACAACATCAGTCTACTCAAGAAAATCTATGAGGTTCAGCCAGTGGTGTCCAAGGCTTTCCAGATGAATGAAATGGTCCCTTTCCCTCGTCTGCTGTCTATGGTGTTGGTCACGTCTCTTCCTCCAGTGTGCAATAAAGTCTTCTTCACTCAAGGTCTTAATGTACACAGCTTGGTGGTCCAGCACACAACACTTTCGCTTCTGGCGTTCATTCTCAAGCGAGCTCAGCAGAATATTGAATACTGTCTGGACAGAACAGTCTGGGAGACCTCAGATATTTACAGCCCTGCTATGATGGAGGAGTTTGTGCAGCTTTACAGAGAGGCGCTGAGCAAGATTCTGCCAGACATGGTGTCCATTGTTTCCATCTGGCAGTTGCACTCAAAGGAGAAAGAAGATGCTGCGAAGATGAagaacagaaaacaaaaacagagcCAAGAACACTCACAACAGGATGATCCACACCTCATCCTGGTCAAAGCTCTGCTTCTTCAAGTCATGTGTTTATATCAGAAAGTGGTTCCTCACCTTGTCACCCAGAGCAGATTCGACTTCAGCAAACTTCTGAAAGGTAGAACAAGCATTAAGACTGAAAACCGATTCAGCAAATTACCTTCTGACCTGGGCAAGGCTAAGCGAATCACTGAAATATTTGCAGGTATTGTGACGGAGAGTGGGATGACACAGGAAGTTCCTCCAGTTTTGCAGTACCAGATTCTACAACTGGCTCTTGAACTTCCTGCAAGCAAATTCTCCTGGTTTCGTGTTCAGGAGATGGCAAATCCAGATTTTGAAAAAGGAGAGAAATCTGTCATCTATTTGTTACTCAAGATGTTTGTAAGTAGTAACAATAGTTACTTGAAGACCTCAAGCAGGATGCTGGTTCTAAAGGTGTTGAGGGACAGTGGTGTATTTGAGCACACGTGGAAGGAGCTGGAGTTATGGCTGGATCATCTGACGATGTTGGGTCTGTCCCAGCAGGAGACCGTCATACAGTTTCTGGACCATGTTTTGACAAGAGTGGTGTGCAACTCACACGTGTACACAGACAAAGCGGCGAGTATGGTCCAAGAGGCGGCAAACCTTCAAGCTAACCTGAACGGTCAGGACGGAGATGAAGCCAGCATACCCATATCACACATCGATGATGTGCTGGACATGGTAGACGTGATTGTGGAGAGCAGTGAAGGTGACATTGAGGAGATCGGACCTTCTCTCACTGAAGACATCATTCTCCAGACATTCCCATTTAGTGCTGTTGTACCGGCTGTGCTGGAGGCTCGAAACAAGCTGCCGGACAGTTTTAAAGACGCGAAAGGGGTGCTGTATGAATACATGGCTGCGGTTCTGTGTGATGTCCTGCACTGTCAGAGAGACCCCCTGGCTCTGTGTTTGACCCTCCAGCACTATGATAAAGAGCTGAGCACATCAGATGCTGCTTCAACTCCTCATGCTTCTGTGGTCAGCTTCTACCACTACTACTCACAGTGGCTCCCTaaaaacacacaccacacactgTTCATCTCTGAAAGTTTCACTGATGGTGGCTCTCATGCTGACTTCACCGCACTGCTGAAGACCTCCTTTACTGAAGGAGCAAATGCTTTTTTACGGACCTCTTTTAAAGAAGCTCTACAGGAAGCTTTGGCCACTCTGACTGTATCCCGGATCCCAGTGGCTGTCAATCAAGTGCTTCTCTACCTCAGAAATTATGTGCTCAACTTCAATATGCTCCTTAAGGAGACGGCAGCAGAGGTGTTGAGCAGTCTGATGATGGTGCTGAACGCTCTCATCCTCAAGTTATTAAGCTCAGACACACATACGCCAGTTGAATCAGAATCTGCAGGACAACATGACGAGGACGCCCTCTTTCTGGACACAAACCAAGTACCTGCTGAGAATACTGACAAGCAACAGATTGTACTGGCTGTCCTCAAGTCAGTGTTTAAGCACCCAGCAGTGGAACAGTGGTTTCTGGCTCTGGAGTTGAGCTCTTTTCCTCCACACAGCCTGAACCCGGTGAGGTTaaagcagctgtgtgtgtgtctgactgagatGACGCTTCTTCTGCTGGAGTCCAGCGCCGACACACTCAGAGATCTGGATGCTTTAGAGCTCATCAGCACGTACCTGACGTCCCCGCAGAGAGCCGTGCTCCGAGAACTACAGGAAATGAAAAGCAATTGTCCCAAAAAGGAATCCCTGTCTGTCCGAGCGCTCCTGGCTCTACAAGAATACATTGAGCCATCCAGCTTTAAGGAAGTAGTGTCGACCCTGCTGTTGCTTCCTCAGAAGCACCTTTTAGCCCCGGAAAACCAACTGAGCGTGTATGGCCGTACAGTGCAGAAATTGCTGTCAGACAGCCTGAAGCGCTCCTCTGCAGTCAGCAGCAGCTGCGTTACTCTGTCTCCAGCACACCTGCAAGGACTGGCTGCTCTCTTCACATCCTGCCAATGTGTGCAGCTCGAGGACTTCCTGCTACAGGTGCTGTCCCGTGAGCCAGGCACCGCTAAACTCATTCAGACGGACATTCTCCTGCACTGCATCCAGAGAGAAAGCCCTTCAGCGCAGGACATAGGAGTTGTTCTTCTGGAAAACTGCTCCACGCATGTCCTTAGTTTTGAGCTCTGGTGCCTGGATCCATCCAACCAAAAACAGATCAGCGTCCAAAACGGCAGCTTTCTGTCTTTACTCAACAGCTATTTGAAGAGATCCACCGCTGATGATCCCACTCGCCCTAAAGACGTTCAAAAATCTGTCCTGAAGGTCCTGAAGAACGCTTTAATGGCTGAGCTGTGGCACACGGTGCAGCAAGGAGAAGCTGGTGTTAGGACTGCTCTGCATGTGGAGGTTCTGTCCAGCCTCATCCGATTGGCTGCTGTAAACTCTGACCTCATCCAGCTTATAAAGGATCTGCCTGCCATCCTGCAGAAACCAGACACTTATGAAAGATGGAAGCTGGCTGACTCTATCAGTGAAAAGCTGTGTGATGATTCAGAGGAACTGCATCAGTGGAGGAAATCTCTTCTGTCGGCTGCTCTCGTCTGGCTCACTGccgtttataaaaaacaaaaagagccACAATCTAATCATGAAGAGTCCATGCTGACTAGACTCCGCTCACTCCTGCTGGGTCAGATCTTTCCAGAAAATATGACTGCATCAGACTGGAACGCCTTTGTCAAGTCCGGGCTAAAGCATCGATACCATGACTGCAACTTTTTGGAGACATTAAACTCTCTGGTGGAGGTCATATATGATACACCAGACACCCCTAAAGAGATGCTGCCAGTGGCTACCATTCACATGATGACCACCACACACTCTCTGTTCTTGCCCACAATGCTGGCGATCGATACCGATAGTCTTCGGCTGACTAAAGAGTCATTGGTGTCACTTTTGCTTACGCTGGTGAGAAAAAGTCCAGAAGTGTGTAACGTCAATCATTTCCTTGTGCTTCTCGGCGCATATGAAGCTTCACTGAGCACCACTGATCAGAAGCTTCTGCTCGTCCTCCAGGAATATGAGAAGAACAACATTAGTCTTGCAGAATTTCAGTTTGTGTTGTGGGGTCCCGCTGCAGTGGAGCATCATAAAACCCGCAAGAGCCTGGGACCTTCACTGTGGCAGAAGCCCACTTCAGAGCATCTGCTGTCTCTGCTCTCTGCTGACAGGATGTTAAACACTGTCACACATTTCCCGCAGCGCCGCTACATCATCCCTCAGgtgAATAAAACCATGATTTACATTCAGGAAGGCAAGCGTTCAGTAGATCTGTCATCTCTGTATGATCCCTGCTTCCTCCTGCCGCTCTTCAGCTTCATCCTTCAGCCAGAGTGTGCTGTGGACTGTCTGAAGTTTGTGTCCTGTCAGGCTTTGGGCGTCACAATGGCAGCCCTCAGCAGTTACGACTCTAAAGTGAGGGCCGCGGCTTATCAAGTACTGGGATCCTTTTATCAACACCTAGAAGGCGCACGATTCAAGGAAAAGAGACAGCTGCTGTACTTGCTGGACACGGTTAAGAACGGGATCCAAAAGCAAAACCTTCGGGTACCTTTCGTGCATGTGGCCTACATTGCCAAAGTTGCCCAGCAAATTTTGAGACCAGAGGAGCACATGTACATGGTGGTGAGCAGGTTTCTTCTGGGAACACAGTTTCTGGACCTCAAGAGAGTTCCTGATTTCTTCAAACTTTTCTACAGCTTTGAACTGGAGCACAAACTGGAGCGCGAGTGGATATTGAGCGTGTTGGAGGAGGGTGTTTGGGATCAGAGCTGCTATGAGCTCTGTGAAATGCAACGCATCTATCAGACCCTGCTGGCTTTTGCAAGCACATCACTCTGTGACCAGGCCACTCAGATTCAGATTGTGAGAGTTCTGCGACAGACAGCTCGTGTCAACAGAGCAGCCTACATCCTAACCAAAGAACACGGAGTCTTAACATGGATCGTACAGCTAATAGAGAAGAGGTATGTGGACAGCAAGTTGTTGAGCTCAGTCATCGAGCTGCTTCATGCTCTGTGGTTCACTAACCTGGGTGACAAGGAGAGTAAAGCAGAAGCCAGCAGCACGTCATCAGAGCAGCCACAGACGTCAGGAAAGTGTCTTCCTCTGCCCATCATCAATGAGTTCCTGTGCACACTGCTCACGGTCATCAGGCATCTGCGGAGTGGAGTGAGCGGCCTTCAGCTGCAGCAGTTCCTGCACACACTCTCCTCTGTACTGGTGCATTGTGGGACAGCTATGAATGCTTATAAAGAGGCCGGCTGGCTGACGCTGCACCCACACAAACTCTCCTGCTCTGAAGTCCTCAGTCTCCTGCAGCGCTGGACAGCACTTTCCCATGATGCCTCGCTTGCGTCTGCACTTCAGACTGTTGGAAACAAACACAAAGTCAAAGAGCTGATGGGCTCTGGAAGAGAAAAAGGCCAAGGAAAATGCCACTCGACCAAGCACGCTCCAATGGAAAAACAGACCGAAAATGCTGAAGTGCTAGATCAAGCTGTGCTGGACGAGTGCAAGCCGCATCTGAGAAACATCCTCTTGCATTGGGAACCCAAAGAGAAAGAGCTTTCCACTTCCACATCTCAAACCGTCTCAGACAAACCAGCTTCCAGTGGTTTAAGCAATACAACTGCATGTGTGATTTTTAAGTGGGCCCTCAAGACACTAACAGAGAGCCGGTTTGATGACAAATGCACCTTAGCGCTCCTAAAATGGACGCACAGCACCATAATGCCACACAGAAGTATTACAGACGCAGTGCTGTCCGATGAAGGAGTGAGAAAAGACTTGCTGAGATTATTTCACCTCACTGCTCAGGAAGGAACGCTGAACACTCTTCAGCTCTTCTCCACAGTCATGCTTCATTTGCTGGAGGCTCACAGAGATCGTCTGAATGCTGGACATCAGACGCTGATACAAACCTGCTTGCTTACAAACACAGATGATGAGGCCAAGAAAGAAACGGGGTTGAATCTGCTGTCGCTGTATTTGTACGAATTGTGGAGCGAAGCCCAGTCACCTGACCTCCTGCTGACCCACGCCAGACTCATCTGCAGCGGGACGTCCAGCAAAAAGCCCAAATCACACATACTGCACATCTGCAGGGACATTCTGGCTGCGTTTCACTCAtgacatcatcatcaacatcatcatctcTCTGTATGACAacagatcttttttttatttatttttttatcaaagttGTAATAAAAAAGGAGTGAGTCTTTCCATAACTACTTTATTTGTTTAAGGAGGAATATAAAAAGTGTCTATGGATCATTgttagtgatttttttatttagggaAATTTCAGATTCCAAACATTGacgtacagttaaagtcagaattattagcccccctgattaattttttccctcaatttctttttaacggagaacagattttttttttcagcacatttctaaacataatagttttaataactcatctctaatcactgatttattttatctttgccatgatgacagtaaataatatttttctagatatttttcaagacacttctatacagcttaaagtgacatttaaaggcttaattaggttatctaggcaggttagggtaattaggcaagttaataaATAACGATGATTTgtcctgtagactatcaaaaaaatatatagcttaaaggggctaataatattgaccttaaaatgttttttaaaaattcaaaactgcttttgttctagctgaaataaaacaaataagacttcctctaaaagacaaaatattatcagacatactgtgaaaatgtccttcctctgttaaacaacatttgggaaatattcaaaaagaaaaaaaaagaaaaatgtaaagggggcgaataattctgacttcaactgtacacaagTGTGCCCAGGTTATgtataaattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagagagatagagagagagagatataacAAGACTACAAAACAATTTAGTTACATAGATattcaaattaatatatatatatatatatatatatatatatatatatatatatatatatataatttatatccTATAcgtatgttttatatttaaatataaataaagattctcgtatatatgtatttattgatacataataaatgtacacagtacacacacttaaattatttcaaaacaatttttttttggatGTGATATAttaatatgcacaaatatataacaaatagagttaaacaattgttttatatattcTTGTTTTGTGAGtttatattcagttgaagtcagaattaaatagccccccctgtttaattttttccccaatttctgtttaacggagagcagatttcttctacacatttccaaacataatagttttaataactcatctctaataactgatttattttatctttgtcatgatgacagtaaataatatttgactagatatttgaattctatacagcttaatgtgacatttaaaggcttaactaggttaattaggttaactatgcaggttagggtaattaggcaagtcattgtataacgatggtttgttctgtagactattgaaaacatttagcttaaagaggctaataatgttgaccttaaaatgggtttttaaaaatttaaaactgcttctagctgaaataaaacaaataagactttctccagaagaaaaaaaatgatcagacgtactgtgaaaatttccttgctctgttaaacatagtttgggaaatatttaaaaaagaaagaaaaaaaaatcaaaggggggttaataattctgacttcaactgtatatagacatAAACACTAAAAAGCGATGAGTAACTTTCACTTAAACTGTGTAAACTTTTTATAACTTGGAATTaagcttaatttttataatttattaagtaaaaaaaaagcataattataacaatttacatgaacataaacaaataatttactCAGTTGGTTTACGTTTGGTGAAGTtcaattaattactttaaaagtGACTGCTTAACCTAAACAGTGAGTAAAGCTGTCTCATTTAAAGTTAATGGCATTTTAGTGCACATAAAACCAAATAAGTTGATTACTGATGAAACTTGATGAAATAATGCATTCAACATTCAGTTTACCAGATATATTTCTGTAAAAGTACTTAAGTGAgtttattcaaatatataaaaagattAATTGATGTTCATAACAATACATtctattattttactttactcaAATATAAAAACTATATTGAAATGGTTATTTTTAGGTTGAGTAAAGCTGTAAGCCTAATACACTGGCAATTTGATGCTGCAAACCCATTTTGACAGAGAAAAGAAGAGACATCAATCATGATCTTGTCATTTGTTTATTGTGACTGATTAATCATTTTCTGTTGTCGCATGAAATTAAGCTTGGTGAACACTAGCGCATGAGTTTACTTCTTGAAGATTCTTCTTATTTATGTCTTTACTGAGATGATGCATAACCTTTCATCAGTGGCAAACCGGATTTTTTGACTCGAGGGCCCCTGCAGAAATTCAAAAGTTCACTGCGTTAAATATGATTCTTTTTTAAAAGGCCACAATTACATTTAAGAAGTGGATTTAATAATTATCTAAGCACTGATAACTCTCTAAACTAAGCAAGGCTACATAGTAAAATCACAATAGCAAATAAAATTAGCAGGTATTTGTACACCCAacataaatatttgataaaaaaaatctatagttgaaaccagaagtttacatacaatataaAAAGGGGCATAACCGTTAAAAAAAGTCGggtgttaatgtgactaaacttctcttttaggtaagttaggattatcaaacgtttttctgttctgcttaatagcagaataatgagagagagaatttttttgagaatttgttataaattttcttgaaagtcaagctTATATAAAAGCTctgatgatggtgtcaaggttttggatgtttctgattggctaattgacaacatttgagttaattggaggcacatcTGTTGaatagtatttaaataaaaaacctcaaacacactgcttccttgtgtgacaacatgggaaaatcaacaagacaagatcaacaaaaaagccagattaaaattagctaaattacactgggaaaaagactaatgtttggagacatgtccagtggtctgatggaactaagattgaactgtttgtctataatgaccagtgttacatttggaggacaaagggaaaagcttacaagccttgaaacaccatcccaactgtgaagtatgggggcggcagcatcatgttgtggggctgttttgctgcaggagggactggtcctcttcacagcatagatggcatcatgaagaaagaacattatgtagaaatactgaagcaacatctcaagacatcagccaggaaattaaaacttggccacaaatgagtcttccaaacggaccatgaccctaagcatacggccaaattagttaaaatgtgttgtaaggacaacagagtgaatgttttggagtggccatcacaaagccctgacctcaatcctatagaaaatttgtgggcagagttgaaaaagcttgtgcgagcaagacagcctacaaatctgactcagttacaccaattctgtcaggagaaatgggccaaaattccttcaaactattgtgaaaaGCTTGTGAAAgtatacccaaaacatttgaccaaagttatacaacttaaaagcaaagctaaaaaatttGCCAAGGAAATggatgtaaacttttgactgtcaataaattaatttaaaaatctaaaaaaataaataaataaaaaaaaaaaattctggcattattctggcatttagcaaatgtaaatcctaatggacctaaaatagtaaacgtttagtatgatttaccatcagacatatATTTTGTAATGGTTATGTTCCTCTTGTATGTAAACTTCTAGTTTCAACTGTAGCATCacgtaatcttttttttttttttttttttttgcttacctTGGCAGTTGTCCTGAATGTGAAATAAGTGACAAAATCAAGAAGAAGAACCCAATGAATGCAGCTAGAATCATCCAGAATATCAGCACAATCGaatctaaattatatattaaaaaacactgTTAGATATTATAGCGGCTGATGAATAAACTAATGTCAAAGTCACTCACATCTGCTGTACTTCAGTGTACTCGCATTCACCAAGACTGGATCCACGTAATCATAGTAGTACTCATAGCCCCACACGTATTCTGAGGAGTTTTTCATTTTCTTGggtgtttgtgaatgtgaaacGGCACCAGAAGCGTGAGTGATTTTTAAATCCTTGATCCCGCCCATGAGAATCACGGTTACGAAAACACAATGAAGCCCCGTCCCCTTCgtagaacatttatttattttattttatctgaaGGTTCACATTTCTCTTACAAGTTATTGGTTCAGTTCAGTCCATCTAACCTATGCATCTAATCTATTTTTATTGGGGGGAAATTTAAGATTCAAAAatttgatgtacagttgaagtcagaattcttagccccctttactttttttttcttttttaaatatttcccaaattatgcttaacagagcaaggacattttcacagtatttctgataatattttaaagtcttatttgttttatttcgactagaatacaagcagttgtacatttttaaaagccattttaaggtcaacattatcagcccctttaagctaatatttttctgatagtctacaaaaccatcgttatacaataacttgcctaatttccctaacctgcctagttaacctaattaacctatttaagcctttaaatgtcgctttacgctgtatagaagtgtcttgaaaaatatctagtcaaatattatgtttgctgtttgctttatttatagagcacatttaaaaacaatagatgttgaccaaagtg

Function

GO:

id name namespace
GO:0090069 regulation of ribosome biogenesis biological_process
GO:0048565 digestive tract development biological_process
GO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biological_process
GO:0000466 maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biological_process
GO:0005730 nucleolus cellular_component

KEGG:

id description
ko03009 Ribosome biogenesis

ZFIN:

id description
ZDB-GENE-030131-5181 Acts upstream of or within digestive tract development and regulation of ribosome biogenesis. Predicted to be active in nucleolus. Is expressed in digestive system; embryonic structure; and head. Orthologous to human URB1 (URB1 ribosome biogenesis homolog).

Ensembl:

ensembl_id ENSDART00000190332

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018811 lncRNA downstream 410171 5215808 ~ 5217706 (-) True XLOC_008989
TCONS_00018810 lncRNA downstream 424710 5202251 ~ 5203167 (-) True XLOC_008986
TCONS_00017703 lncRNA downstream 1142010 4445060 ~ 4485867 (-) True XLOC_008974
TCONS_00017701 lncRNA downstream 1182279 4429018 ~ 4445598 (-) False XLOC_008974
TCONS_00017697 lncRNA downstream 1191446 4422481 ~ 4436431 (-) False XLOC_008974
TCONS_00017751 lncRNA upstream 66603 5787186 ~ 5791331 (-) False XLOC_009005
TCONS_00017753 lncRNA upstream 74380 5794963 ~ 5797918 (-) True XLOC_009005
TCONS_00017759 lncRNA upstream 177827 5898410 ~ 5901485 (-) False XLOC_009008
TCONS_00019119 lncRNA upstream 177827 5898410 ~ 5901982 (-) False XLOC_009008
TCONS_00017758 lncRNA upstream 178321 5898904 ~ 5901478 (-) False XLOC_009008
TCONS_00017740 mRNA downstream 3421 5566186 ~ 5624456 (-) False XLOC_009001
TCONS_00017739 mRNA downstream 3516 5565641 ~ 5624361 (-) False XLOC_009001
TCONS_00017741 mRNA downstream 47784 5570571 ~ 5580093 (-) True XLOC_009001
TCONS_00017738 mRNA downstream 64326 5542068 ~ 5563551 (-) True XLOC_009000
TCONS_00017737 mRNA downstream 103606 5495003 ~ 5524271 (-) True XLOC_008999
TCONS_00017745 mRNA upstream 1942 5722525 ~ 5742531 (-) False XLOC_009003
TCONS_00017746 mRNA upstream 3330 5723913 ~ 5740358 (-) True XLOC_009003
TCONS_00017747 mRNA upstream 52536 5773119 ~ 5780648 (-) False XLOC_009004
TCONS_00017748 mRNA upstream 52539 5773122 ~ 5780593 (-) True XLOC_009004
TCONS_00017749 mRNA upstream 63629 5784212 ~ 5799183 (-) False XLOC_009005
TCONS_00017735 other downstream 244697 5383062 ~ 5383180 (-) True XLOC_008997
TCONS_00017702 other downstream 1145647 4435465 ~ 4482230 (-) False XLOC_008974
TCONS_00017700 other downstream 1145730 4426494 ~ 4482147 (-) False XLOC_008974
TCONS_00017694 other downstream 1262605 4365158 ~ 4365272 (-) True XLOC_008973
TCONS_00017689 other downstream 1523351 4104408 ~ 4104526 (-) True XLOC_008968
TCONS_00017752 other upstream 68755 5789338 ~ 5795415 (-) False XLOC_009005
TCONS_00017769 other upstream 1206435 6927018 ~ 6946091 (-) False XLOC_009012
TCONS_00017770 other upstream 1218305 6938888 ~ 6940927 (-) True XLOC_009012
TCONS_00017772 other upstream 1228088 6948671 ~ 6966239 (-) False XLOC_009013
TCONS_00017773 other upstream 1228310 6948893 ~ 6966245 (-) False XLOC_009013

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU716898 False 2077 lncRNA 0.43 2 NC_048571.1 60487955 ~ 60578290 (+)
striped catfish (Pangasianodon hypophthalmus) TU20010 True 279 lncRNA 0.41 2 NC_047595.1 30902410 ~ 30904308 (+)