RNA id: TCONS_00017747


Basic Information

Item Value
RNA id TCONS_00017747
length 961
RNA type mRNA
GC content 0.48
exon number 4
gene id XLOC_009004
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 5773119 ~ 5780648 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CATGAGCGGAAGTTCGCCGGCATGATGTAAGATGCTAGAAAGAGTTCCCCGGATAGTAAGTGCAGTGCGAAGGTCAGTAGCGTAAAAAGCGAGTAAGTTACTGTAGAATACAGTACTCTTcttataataatactattaaaatataaaaaaatcaacatgCCGAGAGGAAGCCGAAGCAGAACTTCGAGGATGAGTCCTCCAAGTTACTCCTCACCAGCACCGATGGCTCGAGCAGCTCCTCCGCGGTCTTACGCACccgctccggctcctcctccacCTTCAGCGGTGGCtcctcctgctgctgctgctccccGTCAGCCGGGAATGTTCGCTCAGATGGCCTCCACTGCTGCAGGCGTTGCTGTCGGCTCTGCTGTCGGACACACAATAGGTCACGCCATGACCGGTGGCTTTGGCGGAGGGGGACATTCTGAAGCTGCTAGGCCCGATGTGACCTATCAGGAGCCGTACCAGGGTCAGGCCATGTACCCGCCACAGCAGCAACAGCAGCCCATGTACCAGCAGGATCCGCAGCAGCAGAACCCATGTTCATATGAGATGAAGCAGTTCATCGAGTGCGCTCAGTCTCAGAGCGACCTCAAACTCTGCGAGGGATTCAGCGAAGTGCTCAAACAGTGCAGATTCTCCAATGGACTGTCATGAGGTTGGAATCAGAGACCTGAATATAATACTTCAAGCAATTTACTTCTGCTTGCTTTATCTTGATAATGCAAATTTAAATCCtatgtgtaaaataaaaacagcttcatGGAGAAATGCTGTGTAACATGCATATTTAAGTATCTGGTGTAGATGACTGCAGCTTTCTGAATTTATTTTGTGATTGACTTACTGTAGAGGAAATCACAGTGTGAGTTTCCCAGCAGGAGGTTCTTTGTCAGTTGTTGAAAATATTCCATTCAAATGAtcgtaaaatgcaaataaaagaaTCAGAATCATT

Function

GO:

id name namespace
GO:0007005 mitochondrion organization biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0005739 mitochondrion cellular_component
GO:0043565 sequence-specific DNA binding molecular_function

KEGG:

id description
ko03000 Transcription factors

ZFIN:

id description
ZDB-GENE-040426-1737 Predicted to enable sequence-specific DNA binding activity. Predicted to be involved in mitochondrion organization and positive regulation of transcription by RNA polymerase II. Predicted to be active in mitochondrion and nucleus. Human ortholog(s) of this gene implicated in Parkinson's disease 22. Orthologous to human CHCHD2 (coiled-coil-helix-coiled-coil-helix domain containing 2).

Ensembl:

ensembl_id ENSDART00000082388

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018811 lncRNA downstream 555413 5215808 ~ 5217706 (-) True XLOC_008989
TCONS_00018810 lncRNA downstream 569952 5202251 ~ 5203167 (-) True XLOC_008986
TCONS_00017703 lncRNA downstream 1287252 4445060 ~ 4485867 (-) True XLOC_008974
TCONS_00017701 lncRNA downstream 1327521 4429018 ~ 4445598 (-) False XLOC_008974
TCONS_00017697 lncRNA downstream 1336688 4422481 ~ 4436431 (-) False XLOC_008974
TCONS_00017751 lncRNA upstream 6538 5787186 ~ 5791331 (-) False XLOC_009005
TCONS_00017753 lncRNA upstream 14315 5794963 ~ 5797918 (-) True XLOC_009005
TCONS_00017759 lncRNA upstream 117762 5898410 ~ 5901485 (-) False XLOC_009008
TCONS_00019119 lncRNA upstream 117762 5898410 ~ 5901982 (-) False XLOC_009008
TCONS_00017758 lncRNA upstream 118256 5898904 ~ 5901478 (-) False XLOC_009008
TCONS_00017745 mRNA downstream 30588 5722525 ~ 5742531 (-) False XLOC_009003
TCONS_00017746 mRNA downstream 32761 5723913 ~ 5740358 (-) True XLOC_009003
TCONS_00017744 mRNA downstream 52453 5632565 ~ 5720666 (-) True XLOC_009002
TCONS_00017743 mRNA downstream 52536 5627877 ~ 5720583 (-) False XLOC_009002
TCONS_00017742 mRNA downstream 52536 5627877 ~ 5720583 (-) False XLOC_009002
TCONS_00017749 mRNA upstream 3564 5784212 ~ 5799183 (-) False XLOC_009005
TCONS_00017750 mRNA upstream 4092 5784740 ~ 5799170 (-) False XLOC_009005
TCONS_00017754 mRNA upstream 22810 5803458 ~ 5815006 (-) True XLOC_009006
TCONS_00017755 mRNA upstream 48346 5828994 ~ 5892650 (-) False XLOC_009007
TCONS_00017756 mRNA upstream 107200 5887848 ~ 5895124 (-) True XLOC_009007
TCONS_00017735 other downstream 389939 5383062 ~ 5383180 (-) True XLOC_008997
TCONS_00017702 other downstream 1290889 4435465 ~ 4482230 (-) False XLOC_008974
TCONS_00017700 other downstream 1290972 4426494 ~ 4482147 (-) False XLOC_008974
TCONS_00017694 other downstream 1407847 4365158 ~ 4365272 (-) True XLOC_008973
TCONS_00017689 other downstream 1668593 4104408 ~ 4104526 (-) True XLOC_008968
TCONS_00017752 other upstream 8690 5789338 ~ 5795415 (-) False XLOC_009005
TCONS_00017769 other upstream 1146370 6927018 ~ 6946091 (-) False XLOC_009012
TCONS_00017770 other upstream 1158240 6938888 ~ 6940927 (-) True XLOC_009012
TCONS_00017772 other upstream 1168023 6948671 ~ 6966239 (-) False XLOC_009013
TCONS_00017773 other upstream 1168245 6948893 ~ 6966245 (-) False XLOC_009013

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU346724 True 678 lncRNA 0.56 3 CI01000092 2871258 ~ 2876023 (+)
mexican tetra (Astyanax mexicanus) TU205773 True 919 lncRNA 0.47 4 NC_035913.1 14230550 ~ 14234465 (-)