RNA id: TCONS_00017748


Basic Information

Item Value
RNA id TCONS_00017748
length 713
RNA type mRNA
GC content 0.45
exon number 3
gene id XLOC_009004
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 5773119 ~ 5780648 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTAAGTGCAGTGCGAAGGTCAGTAGCGTAAAAAGCGAGTAAGTTACTGTAGAATACAGTACTCTTcttataataatactattaaaatataaaaaaatcaacatgCCGAGAGGAAGCCGAAGCAGAACTTCGAGGATGAGTCCTCCAAGTTACTCCTCACCAGCACCGATGGCTCGAGCAGCTCCTCCGCGGTCTTACGCACccgctccggctcctcctccacCTTCAGCGGTGGCtcctcctgctgctgctgctccccGTCAGCCGGGAATGTTCGCTCAGATGGCCTCCACTGCTGCAGGCGTTGCTGTCGGCTCTGCTGTCGGACACACAATAGGTCACGCCATGACCGGTGGCTTTGGCGGAGGGGGACATTCTGAAGCTGCTAGGCCCGATGTGACCTATCAGGACTGTCATGAGGTTGGAATCAGAGACCTGAATATAATACTTCAAGCAATTTACTTCTGCTTGCTTTATCTTGATAATGCAAATTTAAATCCtatgtgtaaaataaaaacagcttcatGGAGAAATGCTGTGTAACATGCATATTTAAGTATCTGGTGTAGATGACTGCAGCTTTCTGAATTTATTTTGTGATTGACTTACTGTAGAGGAAATCACAGTGTGAGTTTCCCAGCAGGAGGTTCTTTGTCAGTTGTTGAAAATATTCCATTCAAATGAtcgtaaaatgcaaataaaagaaTCAGAATC

Function

GO:

id name namespace
GO:0007005 mitochondrion organization biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0005739 mitochondrion cellular_component
GO:0043565 sequence-specific DNA binding molecular_function

KEGG:

id description
ko03000 Transcription factors

ZFIN:

id description
ZDB-GENE-040426-1737 Predicted to enable sequence-specific DNA binding activity. Predicted to be involved in mitochondrion organization and positive regulation of transcription by RNA polymerase II. Predicted to be active in mitochondrion and nucleus. Human ortholog(s) of this gene implicated in Parkinson's disease 22. Orthologous to human CHCHD2 (coiled-coil-helix-coiled-coil-helix domain containing 2).

Ensembl:

ensembl_id ENSDART00000163555

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018811 lncRNA downstream 555416 5215808 ~ 5217706 (-) True XLOC_008989
TCONS_00018810 lncRNA downstream 569955 5202251 ~ 5203167 (-) True XLOC_008986
TCONS_00017703 lncRNA downstream 1287255 4445060 ~ 4485867 (-) True XLOC_008974
TCONS_00017701 lncRNA downstream 1327524 4429018 ~ 4445598 (-) False XLOC_008974
TCONS_00017697 lncRNA downstream 1336691 4422481 ~ 4436431 (-) False XLOC_008974
TCONS_00017751 lncRNA upstream 6593 5787186 ~ 5791331 (-) False XLOC_009005
TCONS_00017753 lncRNA upstream 14370 5794963 ~ 5797918 (-) True XLOC_009005
TCONS_00017759 lncRNA upstream 117817 5898410 ~ 5901485 (-) False XLOC_009008
TCONS_00019119 lncRNA upstream 117817 5898410 ~ 5901982 (-) False XLOC_009008
TCONS_00017758 lncRNA upstream 118311 5898904 ~ 5901478 (-) False XLOC_009008
TCONS_00017745 mRNA downstream 30591 5722525 ~ 5742531 (-) False XLOC_009003
TCONS_00017746 mRNA downstream 32764 5723913 ~ 5740358 (-) True XLOC_009003
TCONS_00017744 mRNA downstream 52456 5632565 ~ 5720666 (-) True XLOC_009002
TCONS_00017743 mRNA downstream 52539 5627877 ~ 5720583 (-) False XLOC_009002
TCONS_00017742 mRNA downstream 52539 5627877 ~ 5720583 (-) False XLOC_009002
TCONS_00017749 mRNA upstream 3619 5784212 ~ 5799183 (-) False XLOC_009005
TCONS_00017750 mRNA upstream 4147 5784740 ~ 5799170 (-) False XLOC_009005
TCONS_00017754 mRNA upstream 22865 5803458 ~ 5815006 (-) True XLOC_009006
TCONS_00017755 mRNA upstream 48401 5828994 ~ 5892650 (-) False XLOC_009007
TCONS_00017756 mRNA upstream 107255 5887848 ~ 5895124 (-) True XLOC_009007
TCONS_00017735 other downstream 389942 5383062 ~ 5383180 (-) True XLOC_008997
TCONS_00017702 other downstream 1290892 4435465 ~ 4482230 (-) False XLOC_008974
TCONS_00017700 other downstream 1290975 4426494 ~ 4482147 (-) False XLOC_008974
TCONS_00017694 other downstream 1407850 4365158 ~ 4365272 (-) True XLOC_008973
TCONS_00017689 other downstream 1668596 4104408 ~ 4104526 (-) True XLOC_008968
TCONS_00017752 other upstream 8745 5789338 ~ 5795415 (-) False XLOC_009005
TCONS_00017769 other upstream 1146425 6927018 ~ 6946091 (-) False XLOC_009012
TCONS_00017770 other upstream 1158295 6938888 ~ 6940927 (-) True XLOC_009012
TCONS_00017772 other upstream 1168078 6948671 ~ 6966239 (-) False XLOC_009013
TCONS_00017773 other upstream 1168300 6948893 ~ 6966245 (-) False XLOC_009013

Expression Profile

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