RNA id: TCONS_00017756


Basic Information

Item Value
RNA id TCONS_00017756
length 315
RNA type mRNA
GC content 0.53
exon number 4
gene id XLOC_009007
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 5828994 ~ 5895124 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

atgccaactgacccagctgaagctcgatccaAGTTATATTACTTGATATCGCGCTATCTGAGCACGGGGCCGTGTCGGAAAGCGGCCGAGCTCCTTCCACGTCGGTTGGATTGGGAAGGAAATGAACACCCGAGATCTTATGAAGATTTGGTCACAGCCAACAggcatattgcaccagaccacctTTTGCAGATATGCAAGCAAATCGGTCCGGTTCTGGACCGAGAGGTCCCGTCTGGTGTGCCAGGAGTGCACTCTCTACTGGGGGCCGGGAGACACTCTTTACTCCGAACATCAAAAGGTGAGATCAGGTGA

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0007010 cytoskeleton organization biological_process
GO:0008286 insulin receptor signaling pathway biological_process
GO:0008360 regulation of cell shape biological_process
GO:0005634 nucleus cellular_component
GO:0005158 insulin receptor binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041111-120 Predicted to be involved in cytoskeleton organization; regulation of cell shape; and regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human BRWD1 (bromodomain and WD repeat domain containing 1).

Ensembl:

ensembl_id ENSDART00000182858

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00017753 lncRNA downstream 89930 5794963 ~ 5797918 (-) True XLOC_009005
TCONS_00017751 lncRNA downstream 96517 5787186 ~ 5791331 (-) False XLOC_009005
TCONS_00018811 lncRNA downstream 670142 5215808 ~ 5217706 (-) True XLOC_008989
TCONS_00018810 lncRNA downstream 684681 5202251 ~ 5203167 (-) True XLOC_008986
TCONS_00017703 lncRNA downstream 1401981 4445060 ~ 4485867 (-) True XLOC_008974
TCONS_00017759 lncRNA upstream 3286 5898410 ~ 5901485 (-) False XLOC_009008
TCONS_00019119 lncRNA upstream 3286 5898410 ~ 5901982 (-) False XLOC_009008
TCONS_00017758 lncRNA upstream 3780 5898904 ~ 5901478 (-) False XLOC_009008
TCONS_00017760 lncRNA upstream 4062 5899186 ~ 5901478 (-) True XLOC_009008
TCONS_00017775 lncRNA upstream 1073257 6968381 ~ 6976921 (-) False XLOC_009014
TCONS_00017754 mRNA downstream 72842 5803458 ~ 5815006 (-) True XLOC_009006
TCONS_00017749 mRNA downstream 88665 5784212 ~ 5799183 (-) False XLOC_009005
TCONS_00017750 mRNA downstream 88678 5784740 ~ 5799170 (-) False XLOC_009005
TCONS_00017747 mRNA downstream 107200 5773119 ~ 5780648 (-) False XLOC_009004
TCONS_00017757 mRNA upstream 3286 5898410 ~ 5901514 (-) False XLOC_009008
TCONS_00017761 mRNA upstream 243299 6138423 ~ 6247775 (-) False XLOC_009009
TCONS_00017762 mRNA upstream 244574 6139698 ~ 6404443 (-) True XLOC_009009
TCONS_00017763 mRNA upstream 619840 6514964 ~ 6615555 (-) False XLOC_009010
TCONS_00017764 mRNA upstream 620276 6515400 ~ 6650993 (-) True XLOC_009010
TCONS_00017752 other downstream 92433 5789338 ~ 5795415 (-) False XLOC_009005
TCONS_00017735 other downstream 504668 5383062 ~ 5383180 (-) True XLOC_008997
TCONS_00017702 other downstream 1405618 4435465 ~ 4482230 (-) False XLOC_008974
TCONS_00017700 other downstream 1405701 4426494 ~ 4482147 (-) False XLOC_008974
TCONS_00017694 other downstream 1522576 4365158 ~ 4365272 (-) True XLOC_008973
TCONS_00017769 other upstream 1031894 6927018 ~ 6946091 (-) False XLOC_009012
TCONS_00017770 other upstream 1043764 6938888 ~ 6940927 (-) True XLOC_009012
TCONS_00017772 other upstream 1053547 6948671 ~ 6966239 (-) False XLOC_009013
TCONS_00017773 other upstream 1053769 6948893 ~ 6966245 (-) False XLOC_009013
TCONS_00017778 other upstream 1113698 7008822 ~ 7008938 (-) True XLOC_009015