RNA id: TCONS_00017761


Basic Information

Item Value
RNA id TCONS_00017761
length 6992
RNA type mRNA
GC content 0.49
exon number 30
gene id XLOC_009009
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 6138423 ~ 6404443 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GATCAAGATATCTTATTACATCCACGGGGGCCTTGTATATTCTGGATGTGCAGTCGGAGGATGCGGTGAATATTTATCGCTGTACCACGCGGCACCGATACACAGGGGAGACCAGACAGAGTAACAGTGCCCGACTGCTTTTATCAGAACCTGTGGATTCTGCTCCGGTGATTCTGGATGGGTTTGAACGGAAGGAGGTTATGGTGGGTCATCGGGTGGAGCTCCCATGTAAAGCATCTGGTCACCCTCCGCCCAGGTATCGCTGGCTGAGAGACAACAGTCCATTGGAATCAGATAGCCGGTACCATCAGAGTGTATCAGGCCTCCTCATCGAGGCCACACGACCCAGCGATGCAGGCAGTTATGTGTGTGAGGTGTGGAACAGCTTCGGAAATGCCAAAGTGGTCGGACGGCTGGTTGTCAAACAGCCTCTGAAAGCAGTGGTGAGCCCACGGAAGGTGAGGGGCAGCGTGGGTAGCCAAGTGTCTCTGTTCTGTAGTGTGACTGGCTCAGACGAGTTTGACATCACCTGGTACAGGAATGCGGAGAAGATCTATCAGGGTATAAATGTACGAATCACGGGCATTAACAACGAGAACCTGGTGATGGAGGGAATGGCCAAGAGCGATGGAGGAGCGTATCAGTGCTTTGCTCGAAATGGAAAGATGTCCACCCAAGACTTAGTTCAGGTCGTCTTGGAAGATGGGACACCAAAGATCCTCTCTGCCTTCAGCGAGAAGGTTGTGAGCCCGAATGAGCCCATCTCGCTGGTGTGTCACGTGAAAGGAACCCCCCTCCCCACCGTCACCTGGACCCTGGACGACGACCCCGTCATCAAAGACAGCAACCACCGCATGGACCGCATCATCACCACAGAAGGCCACGTGCTCAGCTACCTGAATGTTTCTCACACGCAGGTCAGCGATGGGGGGGTCTACCGCTGCACCTGCAACAACTCGGCCGGATCGGTCTCCTATCAGGCTCGAATAAACGTAAGAGGTCCTGCCAGTATTCGACCAATGAAAAATGTCACTGCCATCGCTGGGAGGGACACGTACATACACTGTCGCATCATTGGTTACCCGTACTACTCTATTAAGTGGTATAAGGATTCCAATCTGCTCCCATTCAACCATCGCCAACGTGCCTTCGAGAACAACGGCACACTCAAGCTGTCCAATGTGCAAAACTCAGACGAGGGAGAGTATACATGCTACGTGTTGGTGGATCCAGAGAAACAAATTCACAGGAGTGTCCATGTGACAGTAAAAGTGCCCCCTCTTATCCAACACTCCGACTCTCAGAGTGCTTCCATTGGTCAGCGTGTCTTCATCCCATGTGTGGTCATATCCGGCGACCTGCCCATGTCTATAACCTGGCACAAAGATGGACGACCAATCAACGCCAGCCTGGGTGTCACCATCGACAACATAGACTTCACCAGCTCACTGCGCATTTCAAACTTGTCGGAAATTCATAATGGCAGTTACACCTGCATCGCCCGGAATGAAGCTGCAGCCGTCGAACATAGCATACAGCTCATCGTTAAAGtTCCACCACATTTTGAGGTTCAGCCAAAAGACCAGGACGGCATATATGGGAAATCAGTTACCTTGAATTGTTCGGCAAAGGGAAATCCAATCCCCACTATAGTGTGGAACCACTCAAAAGGTGCTGGCGTTCCTCAGTTCCAGCCCATTGCCTTGAATTCTGGCTCCCGCGTCCAGCTCCTGGAGAACGGCTCTCTGCTCATAAAACACGTCCTGGAGGAAGATGCTGGATTTTATCTGTGCAAGGTCAGCAATGACGTGGGAGCCGATATCAGCAAGAGCATGTACCTCACCGTTAAAATTCCTGCCATGATCACATCTTACCCCAACACCACACGGGCAGAACAGGGTCACATGACTGAGATGAGCTGCACTGCTCACGGTGAAAAGCCCATCAAGGTTCGCTGGGAGAAGGAATCTCATATCATCAACCCAGACATGAGCCGTTATGTGGTTACTGTGAAGGAAGTGGGGGATGAGGTCATATCCACCCTGCAGATCTTACACACTGTCAGAGAGGATTCTGGCTTTTTCTCTTGCATCGCCATTAACTCTTATGGTGAAGATAAAGGAATCATTCAGCTCATAGTTCAAGATCGTCCTGACCCTCCTGAGGTTGAGATCAGAGAAGTAAAGGACCGGACCATCGCACTTCGCTGGACCATGGGCTTTGATGGCAACAGCCCCATTACAGGATACGACATCAACTATAAAAACAAATCAGCTTCCTGGGCCTCATCACAAATGACCAAAGACGTCTCCCCTCAGCTGAATCAGGCCACCATCATTGAGCTTCACCCTGCTTCCACCTACAACATCCGCATGTTCGCCAAAAACCAGATCGGAGAAAGCAGACCGAGCAACGAGCTGACCATCACCACTGACGAAGCACCACCCGACGGAGCTCCTCAAGACGTGCAGCTGGAAGCGATCTCATCCCAGGGCATCAAAGTCACATGGAAGCCCCCCCACAAACACTTGCAAAATGGCTTGATCCGAAGCTACCAAGTGTGCTATCGGGAGTTCGGGACAGGAGGCAGCCCACAATACAACACCATCAACGTCGACACCACGGGAGACATTGAAACCCTCACTCTTGATAACCTGAAGAAGTACACGCAGTATGAGGTGCGGGTGCAAGCAGCCAATCGAGCAGGAATGGGGCCAACCTCAGAGGAAATCACCATCACCACGCTAGAGGATGTTCCCAGTCGCCCACCTGAAAACGTTGTGACCACAGCTACGACCCCTGAGACCATCTCTCTGTCATGGTCTGCACTGCCCAAAGAAGCCCTCAACGGCATGCTGCTCGGATACCGTGTCATCTTCTGGGCCAACCTACCTGATGGAGAGCTGGGAGAGATCAGGAACATCACTACCACCAAGCCTTCGCTGGAGTTGGAGCGGCTGGAAAAATACACCAACTACAGTATCCAGGTGCTGGCCTTCACTCGAGCTGGAGATGGAGTTCGTAGTGAGCAGATCTACACACGTACCAAAGAGGATGTTCCTGGCCCTCCGGCTGGAGTTAAGGCTGCTGCTTCCACAAGCTCGGTGGTGTTTGTTTCCTGGCTGCCACCACACAAGCTCAACGGGATCATCAGGAAATACATCGTCTTCTGTTCCAACCCTTACCCCACGGTGATTAGTGAGTTTGAAGCCGCACCTGATGTTTATTTCCGTCGCTTGACCAACTTGAACCAGAATTGGCAGTACAGCATCTGGGTTGTGGCGGTGACTGCGGCAGGTCGTGGGAATACCAGTGAAATTATCACCGTAGAGCCCCAAGCTAAAGCCCCTGCTCGAATCCTGACATTCAGTGGCACTGTGACCACTCCCTGGATGAGGGACATTGTCCTTCCATGCAAAGCAGTCGGAGACCCCCCTCCAACAATCAAATGGCTGAAGGGAAATAATGGTACACCTGCTCCAGTTTCAATCGATGGTCGTCGCAGCGCTCACAACAATGGCAGCTTTGTTATTCGTACCGTCAaagcagaggattctgggtattACAGATGTGTTGCCAGCAACAACTGGGGTTCCGATGAGATCATGCTAAATCTTCAGGTCCAAGGCTACATTTTACAGTACTCAGAGGATAACAGTGAAGAATGGGGCAGTTACTCCATCAGCCCCAGTGAGCGCTCTTACCGTCTGGAGAATCTGAAGTGCGGTACTTGGTACAAGTTTACTCTGACTGCACAGAATGCAGTAGGTCCCGGACGCATCAGTGAAATCATTGAGGCCAAAACCCATGGAAAAGAACCACAGTTCGCCAAAGACCACGAGCTTTTCTCAAGTATCAACTCTACCCGCGTGGAGCTCAACCTCATTGGTTGGAACAACGGTGGCTGTCCAATTGACTCCTTCACACTAGAATATCGGCCGGTAGACACTACCAAGTGGACTATGGTAAAGCGGGATTCCCTCACCAAGAGCCACATTCTGTACGACCTACAGGAGGCCACCTGGTATGAGCTCCAGATGAGAGTCGGCAACAGTGCAGGAACAGCGGAGAAGAGGGTGCTGTTCGCTACTCTGAATATGGATGGCAGCACAATTGCTCCATTGCCAAAGAGCGTGGACCCCAGCCAGGAGAACAGGCAGGGAAATGAAGGACTTAAGATGATGGTCACGATCATCTGCATTCTGGTGGCAATCTGCATGGTCTTCATCGTTCTTCTAGTattgaggaggaggagaagagagCAGAGACTCAAGAGATTACGAGATGCTAAGAGCCTAGCGGAGATGCTAATGAGTAAAAATGCACGTACACCTGACACCGTGAACAAGCAGCAGCAGACTCTGCGGATGCACATCGATATCCCACGTGCTCAGCTACTCATCGAGGAGAGGGACACTATGGAGACAATCGATGACCGCTCCACAGTGCTGTTGACGGACAATGACTTTGGAGAAACATCTAAACAGAAGTCCTCAACCGTCACCCATACAGTGCATTACCAGTCTCTATCTCAGGCCACTGGACCACTAGTAGACGTGTCTGATGCTAGACCTGGTACAAACCCCACTGCCCGCCGCACAGCTAAAGCAGGTCCTGCCACACGCAGTCGTTATGCCAGCCAGTGGACCCTGAACCGGCCACATCCTCCCGTctcctcacacacactcactacggACTGGAGGTTGCCCACTCCGCGCGCCACAGGCTCGGTGGACAAAGAGAGCGACAGCTACAGTGTCAGTCCCTCTCAGGACACAGACCGCGCTCGCAGCAGTATGGTGTCTACAGAAAGCGCCTCCTCCACTTATGAGGAGCTAGCCCGTGCCTACGAACACGCCAAAATGGAGGAACAGCTGCGACATGCTAAGTTCACGATCACAGAATGCTTCATATCGGATACATCCTCTGAACAGATGACGGCCGGCACGAATGACTACACAGACAGCCTGACATCCAGCACGCCGTCAGAGTCGGGCATCTGCAGATTCACAGCCTCCCCACCCAAACCACAGGACGCCAGCCGGGTCATGAATATGGCCGTGCCTAAAGCACACAGACCCGGCAACGACAAGCAAACAAAGAGGCAGTCTGAAAGTCCAAAATCCAAAAACAGTAGTCAAAAGGGCTGGCAAAAAGGTCATAACACAATGGCAGAAACAGCAGTAGGAAAACGCTTAGTAGGCAGTGAAACTGGCAATACTTCGCAAAGAACAGACATGAGCAGTGTGCTTATATATCGTGGCTACCAGGAAGTACCACCGAGGAAGTACCCAGTCAATATTCGGGATTCGGGAAATATTCCCTCTGGTGGGCGGATGAATGCAGGTGAACTGGTCCATCTCCCCCCTTACCTACGCATGGACTTCCTTTTGAACCGGGGAGCGGCCTCTTCAGGTCGGGAGGCCACAGGACAGACTTGTATGGACCCACAGAAGAGCCGGATTACAAAGCGGCCGGCGTTGCTTGCCCCCACCCCCTCCGAGACCCCCTCTTCAGCCCTCTCTTCCTCCGGGCCCCCCAGCAGAGAGGCGGTACAGCAGTGGCAGCCGGGAACTGCCTCTACACTGCCACAGCGCGAGCCGGGCGACCTGGCCCAGGCCGCCAAACTCAGCAGCTCCCAGGAATCGCTGCTAGACTCCAGAGGACACCTGAAACAAAGCAACAACCCCTACGCAAAGTCCTACACACTTGTATAACACAGGACTACAGCTACGGACCACGTTGCACTGTcacgcacacacagaaacaaacaaacaaacaaacaaaaaacgtgAGGACCTGCTGCAAAGACGAGAGCTTTTCTGATTCAGAGATGAGTCCTGTACATACATTCTGAATTCCTAAAGAAGTGGATAGTTTTCTTTgcatctgtctttctatctatctcactctccctctctctgtttctctctgttgtttttttttttttactctttcttcctttctttcgcTCACCTCTCTTCCCTCTTCTCTAAGTtggaatctttttattttatttgacgtACGTTATTTTAAATACCACCGTTATGAAGATtgccaaaattatttatttaaattgacagAGGAACTACTTTTGAATTTATATCAAGGATAATTctatagtcattattattattatataaaaatagagaaaaaaaaaattatcaaaaaatgcttttaaaagggCGGGGCGAGGTCAGCTCTGCAGGAAGATGTTGCTTTCTTTATCCGTGACTCgattgttttgaagaatccaTGAGGTGCGATCAAAGATTTCCAAGAGGAACGAGTCCAACGTGGGAGACACACGTCCACAGTTTCCAGTCGTCTCAGAATGTCGTGCTTTCTAAGGACTGCATGGGGacctgcaaataaaaaaagatttttttttttgtcacactaAGGGATTTTATAGTGTTATAATATGTATTATGGCATTATATGTCATAATATATGTTacaacatacatataaatatataaatatatatatataaatatatgaatacacATGAAGAGATCACTTTTATTTGTGGATAATAcagggaagaaaaaaaagatttggtaAATAAAGTCCTTAGTCATGTTTGCACACATCTGGTTTGATTAGAAAATTGAAACTGTTGGGTTCTCTTGTCTTTTTTTGTGACTGCGTAACGGTAGTTTCATCTGATGATACTGCGGAGAGCACGTGTGACGCAAAGAGAGAAGCGCGGGAGGAAAACAAACGTCAACCTCGGCGGTTTTCTCCAGCGGCTCcttgaatgaacgaatgaatggtATCTGATTCACCTGTTTGTAGATGGTGTGGCCTGTTTTTGTGTAAGACACGCAAcaaagagaagatattttaattgAGCAATATGACACTGGATTTACTAATAATTTCGTAATTCTTGGACATCTTGAAGTACTAACAGATATGAATGTATTCAGTAATGcataatgaaaaataaacccGAAGATGATTGACAATAAAGAGACAAACTAATGA

Function

GO:

id name namespace
GO:0070593 dendrite self-avoidance biological_process
GO:0007399 nervous system development biological_process
GO:0007411 axon guidance biological_process
GO:0007155 cell adhesion biological_process
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0030424 axon cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0098632 cell-cell adhesion mediator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-031118-67 Predicted to enable cell-cell adhesion mediator activity. Predicted to be involved in axon guidance; dendrite self-avoidance; and homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to act upstream of or within cell adhesion and nervous system development. Predicted to be located in membrane. Predicted to be integral component of plasma membrane. Predicted to be active in axon and plasma membrane. Is expressed in ciliary marginal zone; retina; retinal ganglion cell layer; retinal inner nuclear layer; and retinal outer nuclear layer. Orthologous to human DSCAM (DS cell adhesion molecule).

Ensembl:

ensembl_id ENSDART00000148350

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019119 lncRNA downstream 236441 5898410 ~ 5901982 (-) False XLOC_009008
TCONS_00017759 lncRNA downstream 236938 5898410 ~ 5901485 (-) False XLOC_009008
TCONS_00017758 lncRNA downstream 236945 5898904 ~ 5901478 (-) False XLOC_009008
TCONS_00017760 lncRNA downstream 236945 5899186 ~ 5901478 (-) True XLOC_009008
TCONS_00017753 lncRNA downstream 340505 5794963 ~ 5797918 (-) True XLOC_009005
TCONS_00017775 lncRNA upstream 720606 6968381 ~ 6976921 (-) False XLOC_009014
TCONS_00017779 lncRNA upstream 784322 7032097 ~ 7034722 (-) True XLOC_009016
TCONS_00019120 lncRNA upstream 816693 7064468 ~ 7065313 (-) True XLOC_009017
TCONS_00019121 lncRNA upstream 2102254 8350029 ~ 8394601 (-) True XLOC_009023
TCONS_00019122 lncRNA upstream 2351816 8599591 ~ 8602094 (-) True XLOC_009025
TCONS_00017757 mRNA downstream 236909 5898410 ~ 5901514 (-) False XLOC_009008
TCONS_00017756 mRNA downstream 243299 5887848 ~ 5895124 (-) True XLOC_009007
TCONS_00017755 mRNA downstream 245773 5828994 ~ 5892650 (-) False XLOC_009007
TCONS_00017754 mRNA downstream 323417 5803458 ~ 5815006 (-) True XLOC_009006
TCONS_00017749 mRNA downstream 339240 5784212 ~ 5799183 (-) False XLOC_009005
TCONS_00017763 mRNA upstream 267189 6514964 ~ 6615555 (-) False XLOC_009010
TCONS_00017764 mRNA upstream 267625 6515400 ~ 6650993 (-) True XLOC_009010
TCONS_00017765 mRNA upstream 590264 6838039 ~ 6863317 (-) False XLOC_009011
TCONS_00017766 mRNA upstream 590489 6838264 ~ 6863317 (-) False XLOC_009011
TCONS_00017767 mRNA upstream 606906 6854681 ~ 6863150 (-) True XLOC_009011
TCONS_00017752 other downstream 343008 5789338 ~ 5795415 (-) False XLOC_009005
TCONS_00017735 other downstream 755243 5383062 ~ 5383180 (-) True XLOC_008997
TCONS_00017702 other downstream 1656193 4435465 ~ 4482230 (-) False XLOC_008974
TCONS_00017700 other downstream 1656276 4426494 ~ 4482147 (-) False XLOC_008974
TCONS_00017694 other downstream 1773151 4365158 ~ 4365272 (-) True XLOC_008973
TCONS_00017769 other upstream 679243 6927018 ~ 6946091 (-) False XLOC_009012
TCONS_00017770 other upstream 691113 6938888 ~ 6940927 (-) True XLOC_009012
TCONS_00017772 other upstream 700896 6948671 ~ 6966239 (-) False XLOC_009013
TCONS_00017773 other upstream 701118 6948893 ~ 6966245 (-) False XLOC_009013
TCONS_00017778 other upstream 761047 7008822 ~ 7008938 (-) True XLOC_009015

Expression Profile

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