RNA id: TCONS_00017767


Basic Information

Item Value
RNA id TCONS_00017767
length 823
RNA type mRNA
GC content 0.51
exon number 8
gene id XLOC_009011
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 6838039 ~ 6863317 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGCGTCGCTTCATAGACATCAGTAGCGCGAAAAGGACCCGACATCATCCCAAACGCGCCGCTAATGCTGGATACTCGGCCCGGTTCACGCTTCTGCTGCTACGTTCTTATTAAGTTATTGTAGAGTATCTCCCGGTCTGACGTGTGTTGTCCTCCGTCAGTGAGTGTGTGAGCTCGGCTTCCGTATCGCATGGATAAGAGGTATGAGGAGTTGGTGCAGTACCCAGGCTCTGACGCCATGCCTGTGGGAGGCTACAGGGACACCATGAGGTCACTTCCTCCACCTCACTATGGCCACACTGTGCCTGACTCTCTGAAACACCACCGGGACCAGATCTATGGTCATCCTCTGTTTCCTCTCCTGGCTCTCGTATTTGAAAAGTGTGAACTTGCCACTTGCTCACCACGAGACTCCACCTCCATGTCAAACCCCGCCCACCTCCCTGGGATGACCAATCACAGTGATGTCTGCTCCTCTGACTCGTTCAACGATGATATTGCAGCCTTTGCCAAACAAATTCGATCAGAGAAACCCATATTTTCATCAAATCCAGAACTGGATAATCTGATGATCCAGGCCATTCAAGTTTTACGGTTTCATCTATTAGAACTAGAAAAGGGTAAGATGCCCACTGATTTGGTGCTGGAAGACCGAGAGGGTGGATCTAAATCTGACATGGAAGACTTCACTGGTTCTTGTACAAGTCTGTCAGAACAAAATCAGTCTTGGTTGCGAGACCCAGATGACTGTGTGTCAACCCCCTCAGGGACCCCCAGTGCCTCCTGTGGGCTCAACTCACACAGTGTGGAGAACTGCAGTGATG

Function

GO:

id name namespace
GO:0048484 enteric nervous system development biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0031016 pancreas development biological_process
GO:0031017 exocrine pancreas development biological_process
GO:0009880 embryonic pattern specification biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0035066 positive regulation of histone acetylation biological_process
GO:0008284 positive regulation of cell population proliferation biological_process
GO:1901166 neural crest cell migration involved in autonomic nervous system development biological_process
GO:0001654 eye development biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0007420 brain development biological_process
GO:0030902 hindbrain development biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific molecular_function
GO:0005515 protein binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG:

id description
ko03000 Transcription factors

ZFIN:

id description
ZDB-GENE-010406-2 Enables sequence-specific DNA binding activity. Involved in hindbrain development and positive regulation of transcription by RNA polymerase II. Acts upstream of or within autonomic nervous system development; exocrine pancreas development; and positive regulation of histone acetylation. Located in cytoplasm and nucleus. Is expressed in several structures, including fin bud; mesoderm; neural keel; neural plate; and posterior neural tube. Orthologous to human MEIS3 (Meis homeobox 3).

Ensembl:

ensembl_id ENSDART00000153815

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019119 lncRNA downstream 952699 5898410 ~ 5901982 (-) False XLOC_009008
TCONS_00017759 lncRNA downstream 953196 5898410 ~ 5901485 (-) False XLOC_009008
TCONS_00017758 lncRNA downstream 953203 5898904 ~ 5901478 (-) False XLOC_009008
TCONS_00017760 lncRNA downstream 953203 5899186 ~ 5901478 (-) True XLOC_009008
TCONS_00017753 lncRNA downstream 1056763 5794963 ~ 5797918 (-) True XLOC_009005
TCONS_00017775 lncRNA upstream 105231 6968381 ~ 6976921 (-) False XLOC_009014
TCONS_00017779 lncRNA upstream 168947 7032097 ~ 7034722 (-) True XLOC_009016
TCONS_00019120 lncRNA upstream 201318 7064468 ~ 7065313 (-) True XLOC_009017
TCONS_00019121 lncRNA upstream 1486879 8350029 ~ 8394601 (-) True XLOC_009023
TCONS_00019122 lncRNA upstream 1736441 8599591 ~ 8602094 (-) True XLOC_009025
TCONS_00017764 mRNA downstream 203688 6515400 ~ 6650993 (-) True XLOC_009010
TCONS_00017763 mRNA downstream 239126 6514964 ~ 6615555 (-) False XLOC_009010
TCONS_00017762 mRNA downstream 450238 6139698 ~ 6404443 (-) True XLOC_009009
TCONS_00017761 mRNA downstream 606906 6138423 ~ 6247775 (-) False XLOC_009009
TCONS_00017757 mRNA downstream 953167 5898410 ~ 5901514 (-) False XLOC_009008
TCONS_00017768 mRNA upstream 63837 6926987 ~ 6946286 (-) False XLOC_009012
TCONS_00017771 mRNA upstream 85494 6948644 ~ 6966245 (-) False XLOC_009013
TCONS_00017774 mRNA upstream 100482 6963632 ~ 6966221 (-) True XLOC_009013
TCONS_00017776 mRNA upstream 105481 6968631 ~ 6976921 (-) False XLOC_009014
TCONS_00017777 mRNA upstream 106625 6969775 ~ 6976851 (-) True XLOC_009014
TCONS_00017752 other downstream 1059266 5789338 ~ 5795415 (-) False XLOC_009005
TCONS_00017735 other downstream 1471501 5383062 ~ 5383180 (-) True XLOC_008997
TCONS_00017702 other downstream 2372451 4435465 ~ 4482230 (-) False XLOC_008974
TCONS_00017700 other downstream 2372534 4426494 ~ 4482147 (-) False XLOC_008974
TCONS_00017694 other downstream 2489409 4365158 ~ 4365272 (-) True XLOC_008973
TCONS_00017769 other upstream 63868 6927018 ~ 6946091 (-) False XLOC_009012
TCONS_00017770 other upstream 75738 6938888 ~ 6940927 (-) True XLOC_009012
TCONS_00017772 other upstream 85521 6948671 ~ 6966239 (-) False XLOC_009013
TCONS_00017773 other upstream 85743 6948893 ~ 6966245 (-) False XLOC_009013
TCONS_00017778 other upstream 145672 7008822 ~ 7008938 (-) True XLOC_009015

Expression Profile

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