RNA id: TCONS_00017768


Basic Information

Item Value
RNA id TCONS_00017768
length 1568
RNA type mRNA
GC content 0.40
exon number 10
gene id XLOC_009012
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 6926987 ~ 6946286 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGTGACGTCTTATAGAAAAATAAAAGCTGCAGAATAAAACAACCATACATTATAAAATTGTGCCAGATTTGAACGGTTTTTTCATCTGATTGTGACGATAACTTTTTTTAACTCGTTACCACTATCAGATAAAGTTGCTGAAGCtaagttatattatattcatGATAAACAGGTCACCAACTCTTTGATTGCAACTATATTGGTCAAAGGGCACCGATGGCATTAGTGTTCAAGTCTGCTTTCAGAAAACAGGGTCTGTTTGTACCGTTCCTGAATGCTGTGAGAGGAATGTCTTCATCAGGAGGATCCACCCCTGCCTTCACAACTCTGTCAATAAGCCAGCCACTTGACACCATCACTCATGTTGAGATCTCTCGTCCGGAGAAACGCAATGCCATGAACAAAGCATTCTGGCTTGAAATGGTTGACTGCTTTAATCAGATAGCTGAAGACCCAGAATGCCGTGCTGTAGTTTTCTCAGGTGCTGGAAAACTGTTCACTTCTGGTATTGACCTCATGGGCATGGCCGGTGATATTCTGCAGCCTGTAGGTGATGACACTGCCAGGATATCATGGAATTTGCGTCGCACCATAAGTAAATACCAAGAGACCTTCTCTGTTATTGAAAAGTGTCCAAAACCAGTGATTGTAGCCATTCATGGTGCATGTATTGGAGGAGgaGTGGACTTGATCACAGCATGTGATATACGCCTGTGTACACAGGATGCCTGGTTTCAGGTCAAGGAAGTTGATATTGGTTTGGCTGCTGATGTTGGGACTTTGCAACGCCTTCCCAGAGTTATTGGAAGTCGAAGTCTAGTGAACGAATTGGCTTTAACTGCAAGGAAGATGTATGCTGATGAAGCCAAGAGCTGTGGATTGGTCAGCCGTGTGTTCCCAGATAAAGAGACTATGATGGCTGGAGCTCTGGAGATGGCACAAGAGATTGCCAGCAAAAGTCCGGTAGCAGTCCAGGGAACCAAAGTCAATCTCATTTACTCCAGAGACCACAGTGTTCCAGATTCTCTGAATTATATGAACACTTGGAATATGAGCATGCTTCAAACCCAAGATTTAATGAAATCAGCTCAGGCAGCGATGGAGAAGAAGAACCTCAAAGAAGTTATTTTCTCAAAGCTCTGAGATTCcaagcaccaaaaaaaaaaaagattataaagtTCATTGAACGCCATGTCCTGAGATCAATTTGATCTGCTCATCTTAATTAACATGATTTTTACAATTGAAACATGTCTATAGCGATGACATATTTACATTCTGTCTTCATTTTCACTGAGTACATATCTGCAGTTTGAAGATAAGTCTTTCTGGGTCAAGCAAGATGAatgtttgatttaatattttaatggttGCCTTCAATACTGATTCACAAATGTTAATTAACCAAAAAGCTGCTAAGCCCCTAAAAGCTTAACACCTAGATAAAGATTCATACATAATCAGATTTTAACTGATTTTGTGATTCAAGACTTCGGCATCAAACATGTAAAACTGTGATGTTTTCAATTGTGATATTTTTTGCATCTCAATAAAAAAGCTAATGCTCA

Function

GO:

id name namespace
GO:0005739 mitochondrion cellular_component
GO:0051750 delta3,5-delta2,4-dienoyl-CoA isomerase activity molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
ko04146 Peroxisome

ZFIN:

id description
ZDB-GENE-041010-170 Predicted to enable delta3,5-delta2,4-dienoyl-CoA isomerase activity. Predicted to be active in mitochondrion.

Ensembl:

ensembl_id ENSDART00000019330

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019119 lncRNA downstream 1025005 5898410 ~ 5901982 (-) False XLOC_009008
TCONS_00017759 lncRNA downstream 1025502 5898410 ~ 5901485 (-) False XLOC_009008
TCONS_00017758 lncRNA downstream 1025509 5898904 ~ 5901478 (-) False XLOC_009008
TCONS_00017760 lncRNA downstream 1025509 5899186 ~ 5901478 (-) True XLOC_009008
TCONS_00017753 lncRNA downstream 1129069 5794963 ~ 5797918 (-) True XLOC_009005
TCONS_00017775 lncRNA upstream 22095 6968381 ~ 6976921 (-) False XLOC_009014
TCONS_00017779 lncRNA upstream 85811 7032097 ~ 7034722 (-) True XLOC_009016
TCONS_00019120 lncRNA upstream 118182 7064468 ~ 7065313 (-) True XLOC_009017
TCONS_00019121 lncRNA upstream 1403743 8350029 ~ 8394601 (-) True XLOC_009023
TCONS_00019122 lncRNA upstream 1653305 8599591 ~ 8602094 (-) True XLOC_009025
TCONS_00017765 mRNA downstream 63670 6838039 ~ 6863317 (-) False XLOC_009011
TCONS_00017766 mRNA downstream 63670 6838264 ~ 6863317 (-) False XLOC_009011
TCONS_00017767 mRNA downstream 63837 6854681 ~ 6863150 (-) True XLOC_009011
TCONS_00017764 mRNA downstream 275994 6515400 ~ 6650993 (-) True XLOC_009010
TCONS_00017763 mRNA downstream 311432 6514964 ~ 6615555 (-) False XLOC_009010
TCONS_00017771 mRNA upstream 2358 6948644 ~ 6966245 (-) False XLOC_009013
TCONS_00017774 mRNA upstream 17346 6963632 ~ 6966221 (-) True XLOC_009013
TCONS_00017776 mRNA upstream 22345 6968631 ~ 6976921 (-) False XLOC_009014
TCONS_00017777 mRNA upstream 23489 6969775 ~ 6976851 (-) True XLOC_009014
TCONS_00017780 mRNA upstream 353470 7299756 ~ 7337537 (-) False XLOC_009018
TCONS_00017752 other downstream 1131572 5789338 ~ 5795415 (-) False XLOC_009005
TCONS_00017735 other downstream 1543807 5383062 ~ 5383180 (-) True XLOC_008997
TCONS_00017702 other downstream 2444757 4435465 ~ 4482230 (-) False XLOC_008974
TCONS_00017700 other downstream 2444840 4426494 ~ 4482147 (-) False XLOC_008974
TCONS_00017694 other downstream 2561715 4365158 ~ 4365272 (-) True XLOC_008973
TCONS_00017772 other upstream 2385 6948671 ~ 6966239 (-) False XLOC_009013
TCONS_00017773 other upstream 2607 6948893 ~ 6966245 (-) False XLOC_009013
TCONS_00017778 other upstream 62536 7008822 ~ 7008938 (-) True XLOC_009015
TCONS_00017797 other upstream 1893216 8839502 ~ 8856379 (-) True XLOC_009027
TCONS_00017798 other upstream 2041357 8987643 ~ 8987759 (-) True XLOC_009028

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000092_03652598_03660979.mRNA True 796 mRNA 0.48 8 CI01000092 3652598 ~ 3661104 (-)