RNA id: TCONS_00017769


Basic Information

Item Value
RNA id TCONS_00017769
length 1337
RNA type nonsense_mediated_decay
GC content 0.41
exon number 10
gene id XLOC_009012
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 6926987 ~ 6946286 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TATATTGGTCAAAGGGCACCGATGGCATTAGTGTTCAAGTCTGCTTTCAGAAGGTCTGTTTGTACCGTTCCTGAATGCTGTGAGAGGAATGTCTTCATCAGGAGGATCCACCCCTGCCTTCACAACTCTGTCAATAAGCCAGCCACTTGACACCATCACTCATGTTGAGATCTCTCGTCCGGAGAAACGCAATGCCATGAACAAAGCATTCTGGCTTGAAATGGTTGACTGCTTTAATCAGATAGCTGAAGACCCAGAATGCCGTGCTGTAGTTTTCTCAGGTGCTGGAAAACTGTTCACTTCTGGTATTGACCTCATGGGCATGGCCGGTGATATTCTGCAGCCTGTAGGTGATGACACTGCCAGGATATCATGGAATTTGCGTCGCACCATAAGTAAATACCAAGAGACCTTCTCTGTTATTGAAAAGTGTCCAAAACCAGTGATTGTAGCCATTCATGGTGCATGTATTGGAGGAGgaGTGGACTTGATCACAGCATGTGATATACGCCTGTGTACACAGGATGCCTGGTTTCAGGTCAAGGAAGTTGATATTGGTTTGGCTGCTGATGTTGGGACTTTGCAACGCCTTCCCAGAGTTATTGGAAGTCGAAGTCTAGTGAACGAATTGGCTTTAACTGCAAGGAAGATGTATGCTGATGAAGCCAAGAGCTGTGGATTGGTCAGCCGTGTGTTCCCAGATAAAGAGACTATGATGGCTGGAGCTCTGGAGATGGCACAAGAGATTGCCAGCAAAAGTCCGGTAGCAGTCCAGGGAACCAAAGTCAATCTCATTTACTCCAGAGACCACAGTGTTCCAGATTCTCTGAATTATATGAACACTTGGAATATGAGCATGCTTCAAACCCAAGATTTAATGAAATCAGCTCAGGCAGCGATGGAGAAGAAGAACCTCAAAGAAGTTATTTTCTCAAAGCTCTGAGATTCcaagcaccaaaaaaaaaaaagattataaagtTCATTGAACGCCATGTCCTGAGATCAATTTGATCTGCTCATCTTAATTAACATGATTTTTACAATTGAAACATGTCTATAGCGATGACATATTTACATTCTGTCTTCATTTTCACTGAGTACATATCTGCAGTTTGAAGATAAGTCTTTCTGGGTCAAGCAAGATGAatgtttgatttaatattttaatggttGCCTTCAATACTGATTCACAAATGTTAATTAACCAAAAAGCTGCTAAGCCCCTAAAAGCTTAACACCTAGATAAAGATTCATACATAATCAGATTTTAACTGATTTTGTGATTCAAGACTTCGGCATCAAACATGTAAAACTGTGATGTTTTCAATTGTGATATT

Function

GO:

id name namespace
GO:0005739 mitochondrion cellular_component
GO:0051750 delta3,5-delta2,4-dienoyl-CoA isomerase activity molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
ko04146 Peroxisome

ZFIN:

id description
ZDB-GENE-041010-170 Predicted to enable delta3,5-delta2,4-dienoyl-CoA isomerase activity. Predicted to be active in mitochondrion.

Ensembl:

ensembl_id ENSDART00000167723

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019119 lncRNA downstream 1025036 5898410 ~ 5901982 (-) False XLOC_009008
TCONS_00017759 lncRNA downstream 1025533 5898410 ~ 5901485 (-) False XLOC_009008
TCONS_00017758 lncRNA downstream 1025540 5898904 ~ 5901478 (-) False XLOC_009008
TCONS_00017760 lncRNA downstream 1025540 5899186 ~ 5901478 (-) True XLOC_009008
TCONS_00017753 lncRNA downstream 1129100 5794963 ~ 5797918 (-) True XLOC_009005
TCONS_00017775 lncRNA upstream 22290 6968381 ~ 6976921 (-) False XLOC_009014
TCONS_00017779 lncRNA upstream 86006 7032097 ~ 7034722 (-) True XLOC_009016
TCONS_00019120 lncRNA upstream 118377 7064468 ~ 7065313 (-) True XLOC_009017
TCONS_00019121 lncRNA upstream 1403938 8350029 ~ 8394601 (-) True XLOC_009023
TCONS_00019122 lncRNA upstream 1653500 8599591 ~ 8602094 (-) True XLOC_009025
TCONS_00017765 mRNA downstream 63701 6838039 ~ 6863317 (-) False XLOC_009011
TCONS_00017766 mRNA downstream 63701 6838264 ~ 6863317 (-) False XLOC_009011
TCONS_00017767 mRNA downstream 63868 6854681 ~ 6863150 (-) True XLOC_009011
TCONS_00017764 mRNA downstream 276025 6515400 ~ 6650993 (-) True XLOC_009010
TCONS_00017763 mRNA downstream 311463 6514964 ~ 6615555 (-) False XLOC_009010
TCONS_00017771 mRNA upstream 2553 6948644 ~ 6966245 (-) False XLOC_009013
TCONS_00017774 mRNA upstream 17541 6963632 ~ 6966221 (-) True XLOC_009013
TCONS_00017776 mRNA upstream 22540 6968631 ~ 6976921 (-) False XLOC_009014
TCONS_00017777 mRNA upstream 23684 6969775 ~ 6976851 (-) True XLOC_009014
TCONS_00017780 mRNA upstream 353665 7299756 ~ 7337537 (-) False XLOC_009018
TCONS_00017752 other downstream 1131603 5789338 ~ 5795415 (-) False XLOC_009005
TCONS_00017735 other downstream 1543838 5383062 ~ 5383180 (-) True XLOC_008997
TCONS_00017702 other downstream 2444788 4435465 ~ 4482230 (-) False XLOC_008974
TCONS_00017700 other downstream 2444871 4426494 ~ 4482147 (-) False XLOC_008974
TCONS_00017694 other downstream 2561746 4365158 ~ 4365272 (-) True XLOC_008973
TCONS_00017772 other upstream 2580 6948671 ~ 6966239 (-) False XLOC_009013
TCONS_00017773 other upstream 2802 6948893 ~ 6966245 (-) False XLOC_009013
TCONS_00017778 other upstream 62731 7008822 ~ 7008938 (-) True XLOC_009015
TCONS_00017797 other upstream 1893411 8839502 ~ 8856379 (-) True XLOC_009027
TCONS_00017798 other upstream 2041552 8987643 ~ 8987759 (-) True XLOC_009028

Expression Profile

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