RNA id: TCONS_00017774


Basic Information

Item Value
RNA id TCONS_00017774
length 370
RNA type mRNA
GC content 0.40
exon number 3
gene id XLOC_009013
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 6948644 ~ 6966245 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTACGAGGTGTTTAGTACGGTCTTACTTCTGCGTTCAATCTGCTCATAAAAATGTGCAAACTTGTTTGCAGACAAGCACACGAATCTTCAGTGTGTCGACAACACGCAATAACTCTGAGAATGTTCTGAAAGCTCAGTTCACAGATAAAGAGGTTCAAGATATTCTGACTAAAATCACTGGTCTCAAACTGGACAAAGTATTTCGACCCATAATCCAGCAACTAACACCACCTAAATACAAGCTTTTGACAGACACTGAGTTAGAggagGAAAGATTCATAGTTGTGAGAGAGCCGAGTGGAACTCTGAGGAAAGCGTCATGGAATGAAAGAGATAGGATAATACAAATTTACTTTCCTAAAGAGGGTC

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005763 mitochondrial small ribosomal subunit cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko03011 Ribosome
ko03029 Mitochondrial biogenesis

ZFIN:

id description
ZDB-GENE-070615-31 Predicted to be a structural constituent of ribosome. Predicted to be part of mitochondrial small ribosomal subunit. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 5 and ovarian dysgenesis 7. Orthologous to human MRPS22 (mitochondrial ribosomal protein S22).

Ensembl:

ensembl_id ENSDART00000165487

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019119 lncRNA downstream 1061650 5898410 ~ 5901982 (-) False XLOC_009008
TCONS_00017759 lncRNA downstream 1062147 5898410 ~ 5901485 (-) False XLOC_009008
TCONS_00017758 lncRNA downstream 1062154 5898904 ~ 5901478 (-) False XLOC_009008
TCONS_00017760 lncRNA downstream 1062154 5899186 ~ 5901478 (-) True XLOC_009008
TCONS_00017753 lncRNA downstream 1165714 5794963 ~ 5797918 (-) True XLOC_009005
TCONS_00017775 lncRNA upstream 2160 6968381 ~ 6976921 (-) False XLOC_009014
TCONS_00017779 lncRNA upstream 65876 7032097 ~ 7034722 (-) True XLOC_009016
TCONS_00019120 lncRNA upstream 98247 7064468 ~ 7065313 (-) True XLOC_009017
TCONS_00019121 lncRNA upstream 1383808 8350029 ~ 8394601 (-) True XLOC_009023
TCONS_00019122 lncRNA upstream 1633370 8599591 ~ 8602094 (-) True XLOC_009025
TCONS_00017768 mRNA downstream 17346 6926987 ~ 6946286 (-) False XLOC_009012
TCONS_00017765 mRNA downstream 100315 6838039 ~ 6863317 (-) False XLOC_009011
TCONS_00017766 mRNA downstream 100315 6838264 ~ 6863317 (-) False XLOC_009011
TCONS_00017767 mRNA downstream 100482 6854681 ~ 6863150 (-) True XLOC_009011
TCONS_00017764 mRNA downstream 312639 6515400 ~ 6650993 (-) True XLOC_009010
TCONS_00017776 mRNA upstream 2410 6968631 ~ 6976921 (-) False XLOC_009014
TCONS_00017777 mRNA upstream 3554 6969775 ~ 6976851 (-) True XLOC_009014
TCONS_00017780 mRNA upstream 333535 7299756 ~ 7337537 (-) False XLOC_009018
TCONS_00017781 mRNA upstream 348386 7314607 ~ 7337148 (-) True XLOC_009018
TCONS_00017782 mRNA upstream 418299 7384520 ~ 7598294 (-) False XLOC_009019
TCONS_00017769 other downstream 17541 6927018 ~ 6946091 (-) False XLOC_009012
TCONS_00017770 other downstream 22705 6938888 ~ 6940927 (-) True XLOC_009012
TCONS_00017752 other downstream 1168217 5789338 ~ 5795415 (-) False XLOC_009005
TCONS_00017735 other downstream 1580452 5383062 ~ 5383180 (-) True XLOC_008997
TCONS_00017702 other downstream 2481402 4435465 ~ 4482230 (-) False XLOC_008974
TCONS_00017778 other upstream 42601 7008822 ~ 7008938 (-) True XLOC_009015
TCONS_00017797 other upstream 1873281 8839502 ~ 8856379 (-) True XLOC_009027
TCONS_00017798 other upstream 2021422 8987643 ~ 8987759 (-) True XLOC_009028
TCONS_00017810 other upstream 2635416 9601637 ~ 9619953 (-) False XLOC_009037
TCONS_00017819 other upstream 3219833 10186054 ~ 10186169 (-) True XLOC_009039

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000363_00476704_00479718.mRNA True 1211 mRNA 0.41 6 CI01000363 476704 ~ 480108 (+)