RNA id: TCONS_00017779



Basic Information


Item Value
RNA id TCONS_00017779
length 382
lncRNA type lincRNA
GC content 0.41
exon number 3
gene id XLOC_009016
representative True

Chromosome Information


Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 7032097 ~ 7034722 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


tttttaaaccttttagaTTTCGGAACCAAAGATGATTAAAGCAGGCGGGGGTCTGTCAAGCCGACGGCCATCAATCAGCACACTGCCCAGCAGGAAAAGCCTATCAGAAAGAAGGGGAGGATCTAAAACTATGaTTGAAAATGATCTCAAGCACATTGTTCAGACATAATCACCAGCATGGGATCACCTGGATGGAAAGAAAGATAAACAGCTTAAATTTATACAAAAGATCTGGGAAAGACTGAAAAAACCTGGTATTACATCATATCTTTTccagtgttaggttgcagctagaagggcatccgctgcataaaacttgctgaataagttagcggttcattccactgtggcgaccacacattaataaaaggactaagctgac

Function


GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000154093

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00017775 lncRNA downstream 55176 6968381 ~ 6976921 (-) False XLOC_009014
TCONS_00019119 lncRNA downstream 1130115 5898410 ~ 5901982 (-) False XLOC_009008
TCONS_00017759 lncRNA downstream 1130612 5898410 ~ 5901485 (-) False XLOC_009008
TCONS_00017758 lncRNA downstream 1130619 5898904 ~ 5901478 (-) False XLOC_009008
TCONS_00017760 lncRNA downstream 1130619 5899186 ~ 5901478 (-) True XLOC_009008
TCONS_00019120 lncRNA upstream 29746 7064468 ~ 7065313 (-) True XLOC_009017
TCONS_00019121 lncRNA upstream 1315307 8350029 ~ 8394601 (-) True XLOC_009023
TCONS_00019122 lncRNA upstream 1564869 8599591 ~ 8602094 (-) True XLOC_009025
TCONS_00019123 lncRNA upstream 2154431 9189153 ~ 9191277 (-) True XLOC_009031
TCONS_00018812 lncRNA upstream 3411935 10446657 ~ 10448625 (-) False XLOC_009038
TCONS_00017776 mRNA downstream 55176 6968631 ~ 6976921 (-) False XLOC_009014
TCONS_00017777 mRNA downstream 55246 6969775 ~ 6976851 (-) True XLOC_009014
TCONS_00017771 mRNA downstream 65852 6948644 ~ 6966245 (-) False XLOC_009013
TCONS_00017774 mRNA downstream 65876 6963632 ~ 6966221 (-) True XLOC_009013
TCONS_00017768 mRNA downstream 85811 6926987 ~ 6946286 (-) False XLOC_009012
TCONS_00017780 mRNA upstream 265034 7299756 ~ 7337537 (-) False XLOC_009018
TCONS_00017781 mRNA upstream 279885 7314607 ~ 7337148 (-) True XLOC_009018
TCONS_00017782 mRNA upstream 349798 7384520 ~ 7598294 (-) False XLOC_009019
TCONS_00017783 mRNA upstream 374591 7409313 ~ 7598542 (-) True XLOC_009019
TCONS_00017784 mRNA upstream 1136162 8170884 ~ 8191992 (-) False XLOC_009020
TCONS_00017778 other downstream 23159 7008822 ~ 7008938 (-) True XLOC_009015
TCONS_00017773 other downstream 65852 6948893 ~ 6966245 (-) False XLOC_009013
TCONS_00017772 other downstream 65858 6948671 ~ 6966239 (-) False XLOC_009013
TCONS_00017769 other downstream 86006 6927018 ~ 6946091 (-) False XLOC_009012
TCONS_00017770 other downstream 91170 6938888 ~ 6940927 (-) True XLOC_009012
TCONS_00017797 other upstream 1804780 8839502 ~ 8856379 (-) True XLOC_009027
TCONS_00017798 other upstream 1952921 8987643 ~ 8987759 (-) True XLOC_009028
TCONS_00017810 other upstream 2566915 9601637 ~ 9619953 (-) False XLOC_009037
TCONS_00017819 other upstream 3151332 10186054 ~ 10186169 (-) True XLOC_009039
TCONS_00017830 other upstream 4941421 11976143 ~ 11976260 (-) True XLOC_009050

Expression Profile


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